View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_12 (Length: 393)
Name: NF9377_low_12
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_12 |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 10181648 - 10182046
Alignment:
| Q |
4 |
cttattcacctattttttaaggatccacttattcaccctaagaggtgaattttagtcactaaatcttcctgacnnnnnnnnnnnnnttccgagtacattt |
103 |
Q |
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| T |
10181648 |
cttattcacctattttttaaggatccacttattcaccttaagaggtgaattttagtcactaaatcttcctgacaaaaaaataaaaattccgagtacattt |
10181747 |
T |
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| Q |
104 |
gctaagttattgcaagattgcgtctaagtaccggtacaagtgccgccaattccatcacaacatttg-------------------caaaaatctttgagt |
184 |
Q |
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| T |
10181748 |
gctaagttattgcaagattgcgtc---gtaccggtacaactgccgccaattccatcacaacatttgcaaacaaatccaagttttgcaaaaatctttgagt |
10181844 |
T |
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| Q |
185 |
tccctgcaattacataacaaaaagaggaaaataagaacacaataatgtcatgatgttttagacatgacaatgtctcaattgcttttgaacaaccggcatc |
284 |
Q |
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| T |
10181845 |
tccctgcaattacataacaaaaagaggaaaataagaacacaataatgtcatgatgttttagacatgacaatgtctcaattgcttttgaacaaccggcatc |
10181944 |
T |
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| Q |
285 |
taattctacagcaccggtaatggaaattacggtgccaattgcagtgacg------------gagcagcacatgcccacggttagtgatctgactgttgct |
372 |
Q |
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| T |
10181945 |
taattctacagcaccggtaacggaaattacggtgccaattgcggtgacggagcagcctactgagcagcacatgcccacggttagtgatctgactgttgct |
10182044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 6763921 - 6763855
Alignment:
| Q |
107 |
aagttattgcaagattgcgtctaagtaccggtacaagtgccgccaattccatcacaacatttgcaaa |
173 |
Q |
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| T |
6763921 |
aagttattgtaagattgtgtccaagtactagtacaagtgtctccaattctatcacaacatttgcaaa |
6763855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 26170612 - 26170693
Alignment:
| Q |
258 |
ctcaattgcttttgaacaaccggcatctaattctacagcaccggtaatggaaattacggtgccaattgcagtgacggagcag |
339 |
Q |
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| T |
26170612 |
ctcaattgcttttgaacagccgccatctgtttctgcagcacgggtgatggaaattatggtgccaattgcggtgccagagcag |
26170693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 23733628 - 23733568
Alignment:
| Q |
113 |
ttgcaagattgcgtctaagtaccggtacaagtgccgccaattccatcacaacatttgcaaa |
173 |
Q |
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| T |
23733628 |
ttgcaagattgtgtccaggtactagtgcaagtacctccaattccatcacaacatttgcaaa |
23733568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 2083 - 2149
Alignment:
| Q |
107 |
aagttattgcaagattgcgtctaagtaccggtacaagtgccgccaattccatcacaacatttgcaaa |
173 |
Q |
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| T |
2083 |
aagttattgtaagattgtgtccaagtactagtacaagtgtctccaattctatcacaacatttgcaaa |
2149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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