View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_13 (Length: 388)
Name: NF9377_low_13
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 373
Target Start/End: Complemental strand, 45128275 - 45127931
Alignment:
| Q |
23 |
tttgtctgttttggtaacagtgacctgggctatgatgtgcttaacttggaagtgccaacacttcctgttgttggatcattgataaaagctggagttaagg |
122 |
Q |
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| T |
45128275 |
tttgtctgttttggtaacagtgtactggactatgatgtgcttaacttggaagtgccaacacttcctgttgttggatcattgataaaagctggagttaagg |
45128176 |
T |
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| Q |
123 |
tcctaatttacaggtagctagaaatctacaacttttccttctgnnnnnnnnnnnnnnnnnnnnnnctgttgcttgaactatagggttcacacatgttttt |
222 |
Q |
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| T |
45128175 |
tcctaatttacaggtagctagaaatctacaacttttccttctgtttttttatttatt--------ctgttgcttgaactatagggttcacacatgttttt |
45128084 |
T |
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| Q |
223 |
t--agtgataaaaataacattacaatgtgcattatcattgctacagtggagatcaagactcagtgattccactgactggaagcagaaccttagttcaaaa |
320 |
Q |
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| T |
45128083 |
tttagtgataaaaataacattacaatgtgcattattattgctacagtggagatcaagactcagtgattccactgactggaagcagaaccttagttcaaaa |
45127984 |
T |
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| Q |
321 |
attggctagacaattaggactgaatacaacagttccttacagagtatggtttg |
373 |
Q |
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| T |
45127983 |
attggctagacaattaggactgaatacaacagttccttacagagtatggtttg |
45127931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 40280081 - 40280003
Alignment:
| Q |
60 |
tgcttaacttggaagtgccaacacttcctgttgttggatcattgataaaagctggagttaaggtcctaatttacaggta |
138 |
Q |
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| T |
40280081 |
tgctcaacctggaagtaccaacactccatgttgttggatcaatcataaaagctggagttagggtattaatttataggta |
40280003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 40279918 - 40279813
Alignment:
| Q |
268 |
ggagatcaagactcagtgattccactgactggaagcagaaccttagttcaaaaattggctagacaattaggactgaatacaacagttccttacagagtat |
367 |
Q |
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||||||||||| ||||| |||||||| ||||| ||| | ||||| ||||| || | || |||||| ||| ||| || |||||| | |||||||| |||| |
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| T |
40279918 |
ggagatcaagattcagtaattccactcactggtagccgcaccttggttcacaagctagcaagacaactagcacttaaaacaacaatcccttacagggtat |
40279819 |
T |
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| Q |
368 |
ggtttg |
373 |
Q |
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|||||| |
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| T |
40279818 |
ggtttg |
40279813 |
T |
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