View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_14 (Length: 383)
Name: NF9377_low_14
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 15241594 - 15241941
Alignment:
| Q |
19 |
gttggattatcatgtgatttagagtaatttgaattcatagagtaggattaatcaaattgtttcaaataataatttcgatgaattggttttaaagtggaga |
118 |
Q |
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| T |
15241594 |
gttggattatcatgtgatttagagtaatttgaattcatagagtaggattaatcaaattgtttcaaataat---ttcgatgaattggttttaaagtggaga |
15241690 |
T |
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| Q |
119 |
ccactatgaggcactatctaatttattatcccttcttgttgttatatgataatgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatatt |
218 |
Q |
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| T |
15241691 |
ccactatgaggcactatctaatttat---cccttcttgttgttatatgataatgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatgtt |
15241787 |
T |
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| Q |
219 |
gctgtttttcaatactctctattagcataaaatgttgtcaaataggtctatatatagtggtgtggtgtgtagttaaatttgaacaaactatcattttccg |
318 |
Q |
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| T |
15241788 |
g---ttttgcaatactctctattagcacaaaatgttgtcaaataggtctata----gtggtgtggtgtgtagttaaatttgaacaaactatcattttccg |
15241880 |
T |
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| Q |
319 |
tgatctgcatttgaaaacactgatattttgttctgtgttttggtcgagtcctttgcttctc |
379 |
Q |
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| T |
15241881 |
tgatctgcatttgaaaacactgatattttgttctgtgttttggtcaagtcttttgattctc |
15241941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 34227386 - 34227444
Alignment:
| Q |
284 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgat |
342 |
Q |
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| T |
34227386 |
tgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaacactgat |
34227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 33651744 - 33651792
Alignment:
| Q |
284 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttga |
332 |
Q |
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| T |
33651744 |
tgtgtagctaaatttgaacaaactactattttctgtgatctgcaattga |
33651792 |
T |
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