View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9377_low_15 (Length: 371)
Name: NF9377_low_15
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 45484632 - 45484983
Alignment:
| Q |
7 |
ctttaccaccccaaataccaagaattaaaggaactttagcattgagaagatgagaaaggtagtttttggtaatgtgagtaacaactttgtccatgaaaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45484632 |
ctttaccaccccaaataccaagaattaaaggaactttagcattgagaagatgagaaaggtagtttttggtaatgtgagtaacaactttgtccatgaaaag |
45484731 |
T |
|
| Q |
107 |
aggagcgatgtaataatctccttgaaggtattgaaatgctctagtgactttctgacgataatcaaagacaatgtcggagtctctgccgagaaaattgccg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45484732 |
aggagcgatgtaataatctccttgaaggtattgaaatgatctagtgactttctgacgataatcaaagacaatgtcggagtctctgccgagaaaattgccg |
45484831 |
T |
|
| Q |
207 |
gcgaagacatcgtcaatgataccggcacgttgaccaacggcgatgttcatgttatcagcttcagcgccaagtctgtagagataatctcttccttcagaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45484832 |
gcgaagacatcgtcaatgataccggcacgttgaccaacggcgatgttcatgttatcagcttcagcgccaagtctgtagagataatctcttccttcagaat |
45484931 |
T |
|
| Q |
307 |
ccttagtttcccaagaagactgctctgataactttttcttcttttcatcatc |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45484932 |
ccttagtttcccaagaagactgctctgataactttttcttcttttcatcatc |
45484983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University