View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_18 (Length: 355)
Name: NF9377_low_18
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 40540070 - 40540412
Alignment:
| Q |
6 |
tctgtgataagtcttgagagtaatcagttgtcaggaacaattcccaaatccattggaaattgcagtcaattgagttacctaattttggactcgaatcgat |
105 |
Q |
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| T |
40540070 |
tctgtgataagtcttgagagtaatcagttgtcaggaacaattcccaaatccattggaaattgcagtcaattgagttacctaattttggactcgaatcgat |
40540169 |
T |
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| Q |
106 |
tggagggagttctaccggagagtctaaacaatctaaaagaactttattatgtaagtctcaatcataataatcttggaggggccattcaattagggtcgag |
205 |
Q |
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| T |
40540170 |
tggagggagttctaccggagagtctaaacaatctaaaagaactttattatgtaagtctcaatcataataatcttggaggggccattcaattagggtcgag |
40540269 |
T |
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| Q |
206 |
aaattgcaaaaatttaaattatttgagtctttcattcaataattttactggtggtattccatcaagtttaggtaattgtagtggtctaacagagttcaat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40540270 |
aaattgcaaaaatttaaattatttgagtctttcattcaataattttactggtggtattccatcaagtttaggtaattgtagtggtctaacagagttctat |
40540369 |
T |
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| Q |
306 |
gctgcaatgaataaattagatggaaacataccatcaacctttg |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40540370 |
gctgcaatgaataaattagatggaaacataccatcaacctttg |
40540412 |
T |
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