View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9377_low_24 (Length: 314)

Name: NF9377_low_24
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9377_low_24
NF9377_low_24
[»] chr3 (4 HSPs)
chr3 (1-299)||(38791549-38791846)
chr3 (113-299)||(407387-407576)
chr3 (113-299)||(416366-416555)
chr3 (183-226)||(49963147-49963190)
[»] chr1 (2 HSPs)
chr1 (113-299)||(24345949-24346138)
chr1 (113-299)||(24358221-24358410)
[»] chr6 (2 HSPs)
chr6 (113-299)||(24183870-24184059)
chr6 (181-285)||(20786105-20786213)
[»] chr7 (1 HSPs)
chr7 (129-299)||(27980072-27980247)
[»] chr2 (3 HSPs)
chr2 (181-285)||(15046547-15046655)
chr2 (183-212)||(15229643-15229672)
chr2 (183-244)||(38175789-38175850)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 38791549 - 38791846
Alignment:
Q  1 cgatgtgggactcttaacagtttaaacttgttatctcatctcatctcatttgtttaatgttagtttactgtgtaccaaaagatgcagcaacagggcagct 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38791549 cgatgtgggactcttaacagtttagacttgttatctcatctcatctcatttgtttaatgttagtttactgtgtaccaaaagatgcagcaagagggcagct 38791648  T
Q  101 catagccttgttggacaagcatttgacttttaggaaaaagaggaaaactaacggcgagcctttggcttttagaaagtatgtgttaagactatccatgtaa 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38791649 catagccttgttggacaagc-tttgacttttaggaaaaagaggaaaactaacggtgagcctttggcttttagaaagtatgtgttaagactatccatgtaa 38791747  T
Q  201 tgtaatattactaatgtctatgttatgcatgtgaatgaatgaaagcacgaacatcaatttgtgtgcttcaagttttcatattcttaagttgtatttctt 299  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  38791748 tgtaatattactaatgtctatgttatacatgtgaatgaatgaaagcaggaacatcaatttgtgtgcttcaagttttcatgtttttaagttgtatttctt 38791846  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 407387 - 407576
Alignment:
Q  113 ggacaagcatttgacttttaggaaaaagaggaaaactaacggcgagcctttggcttttagaaagtatgtgttaagactatccatgtaatgtaatattact 212  Q
    ||||||||||||||||||||||||||||||  ||| |||    |||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  407387 ggacaagcatttgacttttaggaaaaagagagaaaataataatgagcatttggcttttaagaagtctgtgttaagactatccatgtaatgtaatattact 407486  T
Q  213 aatgtctatgttatgcatgtgaatgaatgaaa---gcacgaacatcaatttgtgtgcttcaagttttcatattcttaagttgtatttctt 299  Q
     ||||||||||||||||||| |||||||||||   ||| |||||||||||||||| ||||||||||| |||||||| ||| |||||||||    
T  407487 catgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagttttaatattctttagtagtatttctt 407576  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 113 - 299
Target Start/End: Complemental strand, 416555 - 416366
Alignment:
Q  113 ggacaagcatttgacttttaggaaaaagaggaaaactaacggcgagcctttggcttttagaaagtatgtgttaagactatccatgtaatgtaatattact 212  Q
    ||||||||||||||||||||||||||||||  ||| |||    |||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  416555 ggacaagcatttgacttttaggaaaaagagagaaaataataatgagcatttggcttttaagaagtctgtgttaagactatccatgtaatgtaatattact 416456  T
Q  213 aatgtctatgttatgcatgtgaatgaatgaaa---gcacgaacatcaatttgtgtgcttcaagttttcatattcttaagttgtatttctt 299  Q
     ||||||||||||||||||| |||||||||||   ||| |||||||||||||||| ||||||||||| |||||||| ||| |||||||||    
T  416455 catgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagttttaatattctttagtagtatttctt 416366  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 49963190 - 49963147
Alignment:
Q  183 ttaagactatccatgtaatgtaatattactaatgtctatgttat 226  Q
    |||||||||||||||||||||||||||||| |  ||||||||||    
T  49963190 ttaagactatccatgtaatgtaatattactcaaatctatgttat 49963147  T

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Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 113 - 299
Target Start/End: Complemental strand, 24346138 - 24345949
Alignment:
Q  113 ggacaagcatttgacttttaggaaaaagaggaaaactaacggcgagcctttggcttttagaaagtatgtgttaagactatccatgtaatgtaatattact 212  Q
    ||||||||||||||||||||||||||||||  ||| |||    |||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  24346138 ggacaagcatttgacttttaggaaaaagagagaaaataataatgagcatttggcttttaagaagtctgtgttaagactatccatgtaatgtaatattact 24346039  T
Q  213 aatgtctatgttatgcatgtgaatgaatgaaa---gcacgaacatcaatttgtgtgcttcaagttttcatattcttaagttgtatttctt 299  Q
     ||||||||||||||||||| |||||||||||   ||| |||||||||||||||| ||||||||||| |||||||| ||| |||||||||    
T  24346038 catgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagttttaatattctttagtagtatttctt 24345949  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 113 - 299
Target Start/End: Complemental strand, 24358410 - 24358221
Alignment:
Q  113 ggacaagcatttgacttttaggaaaaagaggaaaactaacggcgagcctttggcttttagaaagtatgtgttaagactatccatgtaatgtaatattact 212  Q
    |||||| ||||||||||| |||||||||||  ||| |||    |||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  24358410 ggacaaacatttgactttaaggaaaaagagagaaaataataatgagcatttggcttttaagaagtctgtgttaagactatccatgtaatgtaatattact 24358311  T
Q  213 aatgtctatgttatgcatgtgaatgaatgaaa---gcacgaacatcaatttgtgtgcttcaagttttcatattcttaagttgtatttctt 299  Q
     ||||||||||||||||||| |||||||||||   ||| |||||||||||||||| ||||||||||| |||||||| ||| |||||||||    
T  24358310 catgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagttttaatattctttagtagtatttctt 24358221  T

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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 24183870 - 24184059
Alignment:
Q  113 ggacaagcatttgacttttaggaaaaagaggaaaactaacggcgagcctttggcttttagaaagtatgtgttaagactatccatgtaatgtaatattact 212  Q
    |||||| ||||||||||| |||||||||||  ||| |||    |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  24183870 ggacaaacatttgactttcaggaaaaagagagaaaataataatgagcatttggcttttaggaagtctgtgttaagactatccatgtaatgtaatattact 24183969  T
Q  213 aatgtctatgttatgcatgtgaatgaatgaaa---gcacgaacatcaatttgtgtgcttcaagttttcatattcttaagttgtatttctt 299  Q
     ||||||||||||||||||| |||||||||||   ||| |||||||||||||||| ||||||||||| |||||||| ||| |||||||||    
T  24183970 catgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagttttaatattctttagtagtatttctt 24184059  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 20786105 - 20786213
Alignment:
Q  181 tgttaagactatccatgtaatgtaatattactaatgtctatgttatgcatgtgaatgaatgaaa---gca-cgaacatcaatttgtgtgcttcaagtttt 276  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||||| |||    || | ||||||||||||||| |||||||||||    
T  20786105 tgttaagactatccatgcaatgtaatattactcatgtctatgttatacatgtcaatgaataaaaagtccatctaacatcaatttgtgtacttcaagtttt 20786204  T
Q  277 catattctt 285  Q
     ||||||||    
T  20786205 aatattctt 20786213  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 299
Target Start/End: Complemental strand, 27980247 - 27980072
Alignment:
Q  129 tttaggaaaaagaggaaaactaacggcgagcctttggcttttagaaagtatgtgttaagactatccatgtaatgta--atattactaatgtctatgttat 226  Q
    |||||||||||||| |||| |||  | |||| |||||||||||| |||| |||||||||||| ||||||| |||||  ||||||||  ||||||||||||    
T  27980247 tttaggaaaaagagaaaaattaatagtgagcatttggcttttaggaagtctgtgttaagactgtccatgttatgtaatatattacttttgtctatgttat 27980148  T
Q  227 gcatgtgaatgaatgaaa---gcacgaacatcaatttgtgtgcttcaagttttcatattcttaagttgtatttctt 299  Q
     ||| | |||||||||||   |   |||||||||||||||| ||||||||||| ||||||||||||  ||||||||    
T  27980147 acatatcaatgaatgaaaagtgttggaacatcaatttgtgtacttcaagttttaatattcttaagtattatttctt 27980072  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 15046547 - 15046655
Alignment:
Q  181 tgttaagactatccatgtaatgtaatattactaatgtctatgttatgcatgtgaatgaatgaaa---gca-cgaacatcaatttgtgtgcttcaagtttt 276  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||| ||| |||    || | ||||||||||||||| |||||||||||    
T  15046547 tgttaagactatccatgcaatgtaatattactcatgtctatgttatacatgtcaatcaataaaaagtccatctaacatcaatttgtgtacttcaagtttt 15046646  T
Q  277 catattctt 285  Q
     ||||||||    
T  15046647 aatattctt 15046655  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 15229643 - 15229672
Alignment:
Q  183 ttaagactatccatgtaatgtaatattact 212  Q
    ||||||||||||||||||||||||||||||    
T  15229643 ttaagactatccatgtaatgtaatattact 15229672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 38175789 - 38175850
Alignment:
Q  183 ttaagactatccatgtaatgtaatattactaatgtctatgttatgcatgtgaatgaatgaaa 244  Q
    |||||||||||||||||||||||| ||||| |  |||||||||| ||| | | |||||||||    
T  38175789 ttaagactatccatgtaatgtaatgttactcaaatctatgttatacatttcattgaatgaaa 38175850  T

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