View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_28 (Length: 282)
Name: NF9377_low_28
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 41876818 - 41876563
Alignment:
| Q |
16 |
taattgaataataacgaaaagtcattttgatttgttcaaataattccaaagcactgccatatcaacattgccacctgaaattactattccaatatgcttg |
115 |
Q |
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| T |
41876818 |
taattgaataataacgaaaagtcattttgatttgttcaaataattccaaagcactgccatatcaacattgccacctgaaattactattcctatatgcttg |
41876719 |
T |
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| Q |
116 |
ctatccttccaagcatcatttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaac |
215 |
Q |
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| T |
41876718 |
ctatccttccaagcatcatttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaac |
41876619 |
T |
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| Q |
216 |
atagtttcatggctttcacaatttcactatcttccacagttattatgtcatcaaca |
271 |
Q |
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| T |
41876618 |
atagtttcatggctttcacaatttcactatcttccacagttattatgtcatcaaca |
41876563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 271
Target Start/End: Original strand, 40867242 - 40867482
Alignment:
| Q |
31 |
gaaaagtcattttgatttgttcaaataattccaaagcactgccatatcaacattgccacctgaaattactattccaatatgcttgctatccttccaagca |
130 |
Q |
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| T |
40867242 |
gaaaagtcaatttcatttgttcagagaatcccaaagcacggccatatcaacatttccacctgacactactattcctatatgcttgcaatctttccaagca |
40867341 |
T |
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| Q |
131 |
tcatttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaacatagtttcatggctt |
230 |
Q |
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| T |
40867342 |
ggatttttctgaaaagattcggatagaacagctgcaaggccaattgctccacttggttctacaacaatcttaagaatttcataacacagttgcatggctt |
40867441 |
T |
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| Q |
231 |
tcacaatttcactatcttccacagttattatgtcatcaaca |
271 |
Q |
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| T |
40867442 |
taacaatttcactgtcttccacagttattatgtcgtcaaca |
40867482 |
T |
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