View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_33 (Length: 254)
Name: NF9377_low_33
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 12547393 - 12547617
Alignment:
| Q |
24 |
attgaaattagagagagaaagagaaattaaggtttgtttgttt----tgatttcaatttgaatttgcgttgagagaggaaagtgtttggtgtaatttata |
119 |
Q |
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| T |
12547393 |
attgaaattagagagagaaagagaaattagggtttgtttgtttgtgttgatttcaatttgaatttgcgttgagaaagataagtgtttggtgtaatttata |
12547492 |
T |
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| Q |
120 |
aagggaagattgaaattttaggaggtgaaaataagcgggaattgtgaaaatttgggatttgggatgatgaaaagggaagattgtgaccgtagatgagagg |
219 |
Q |
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| T |
12547493 |
aaggaaagattgaaattttgggaggtgaaaataagcgggaattgtgaaaatttgggatttgggatgatgaaaagggaagattgtgaccgtagatgagagg |
12547592 |
T |
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| Q |
220 |
gtttatcgacggctgttgttctctg |
244 |
Q |
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| T |
12547593 |
gtttatcgacggctgttgttctctg |
12547617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 12531226 - 12531002
Alignment:
| Q |
24 |
attgaaattagagagagaaagagaaattaaggtttgtttgttt----tgatttcaatttgaatttgcgttgagagaggaaagtgtttggtgtaatttata |
119 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
12531226 |
attgaaattagagagagaaagagaaattagggtctgtttgtttgtgttgatttcaatttgaatttgcgttgagaaagataagtgtttggtgtaatttata |
12531127 |
T |
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| Q |
120 |
aagggaagattgaaattttaggaggtgaaaataagcgggaattgtgaaaatttgggatttgggatgatgaaaagggaagattgtgaccgtagatgagagg |
219 |
Q |
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| T |
12531126 |
aaggaaagattgaaattttgggaggtgaaaataagcgggaattgtgaaaatttgggatttgggatgatgaaaagggaagattgtgaccgtagatgagagg |
12531027 |
T |
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| Q |
220 |
gtttatcgacggctgttgttctctg |
244 |
Q |
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| T |
12531026 |
gtttatcgacggctgttgttctctg |
12531002 |
T |
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