View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9377_low_35 (Length: 252)
Name: NF9377_low_35
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 49187770 - 49187933
Alignment:
| Q |
57 |
aattaattaattataaattagaagatgagctttcgggtacaattttataaggaaaatatcttagtcatttgactaaagaagcaaatgaaaattgtgaatt |
156 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49187770 |
aattaattaattttaaattagaagatgagctttcgggtacaattttataaggaaaatatcttagtcatttgactaaagaagcaaatgaaaattgtgaatt |
49187869 |
T |
|
| Q |
157 |
ggtatctttcctattcatagtcttttgtttaagttcttttggtattttccttaggttagagtcc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49187870 |
ggtatctttcctattcatagtcttttgtttaagttcttttggtattgtccttaggttagagtcc |
49187933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University