View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9377_low_38 (Length: 241)

Name: NF9377_low_38
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9377_low_38
NF9377_low_38
[»] chr3 (14 HSPs)
chr3 (123-223)||(30732318-30732418)
chr3 (7-118)||(29523579-29523690)
chr3 (5-118)||(19890871-19890984)
chr3 (26-118)||(962997-963089)
chr3 (25-112)||(48569879-48569966)
chr3 (26-118)||(3141066-3141158)
chr3 (25-85)||(34332682-34332742)
chr3 (25-85)||(2364490-2364550)
chr3 (25-85)||(7312989-7313049)
chr3 (25-85)||(19920096-19920156)
chr3 (26-85)||(10323438-10323497)
chr3 (26-107)||(2756056-2756137)
chr3 (5-53)||(11204012-11204061)
chr3 (7-52)||(33496742-33496787)
[»] chr6 (10 HSPs)
chr6 (5-118)||(17573489-17573602)
chr6 (1-118)||(21629941-21630058)
chr6 (7-118)||(10577083-10577194)
chr6 (5-118)||(17606168-17606281)
chr6 (7-118)||(20882867-20882978)
chr6 (26-112)||(13937914-13938000)
chr6 (25-85)||(21168412-21168472)
chr6 (25-112)||(15958653-15958740)
chr6 (7-64)||(11462602-11462659)
chr6 (25-63)||(14372880-14372918)
[»] chr5 (11 HSPs)
chr5 (5-118)||(8300016-8300129)
chr5 (5-118)||(25857258-25857371)
chr5 (1-65)||(27767231-27767295)
chr5 (7-118)||(10776960-10777071)
chr5 (26-118)||(33169872-33169964)
chr5 (26-118)||(24408142-24408234)
chr5 (25-112)||(27795696-27795783)
chr5 (25-85)||(30732181-30732241)
chr5 (26-85)||(42513934-42513993)
chr5 (25-83)||(23238597-23238655)
chr5 (25-85)||(12825412-12825472)
[»] chr8 (14 HSPs)
chr8 (5-118)||(20824489-20824602)
chr8 (7-118)||(2170537-2170648)
chr8 (7-118)||(17699677-17699787)
chr8 (7-111)||(43270648-43270752)
chr8 (44-112)||(13200297-13200365)
chr8 (25-112)||(13879327-13879414)
chr8 (25-112)||(25090600-25090687)
chr8 (25-106)||(8300016-8300097)
chr8 (25-85)||(13396601-13396661)
chr8 (25-85)||(41665236-41665296)
chr8 (26-85)||(7924600-7924659)
chr8 (25-84)||(32266775-32266834)
chr8 (25-112)||(42177429-42177516)
chr8 (66-111)||(28993070-28993115)
[»] chr1 (7 HSPs)
chr1 (5-118)||(16917643-16917756)
chr1 (5-118)||(43388560-43388673)
chr1 (29-118)||(2491429-2491518)
chr1 (25-85)||(11908972-11909032)
chr1 (26-85)||(6050817-6050876)
chr1 (25-115)||(47622914-47623004)
chr1 (25-106)||(35541262-35541343)
[»] chr2 (6 HSPs)
chr2 (22-110)||(14439956-14440044)
chr2 (7-112)||(12645731-12645836)
chr2 (25-112)||(40176881-40176968)
chr2 (22-112)||(38604219-38604309)
chr2 (55-84)||(21517696-21517725)
chr2 (52-84)||(12525181-12525213)
[»] chr7 (6 HSPs)
chr7 (7-118)||(37254953-37255064)
chr7 (5-118)||(25619658-25619771)
chr7 (18-121)||(31422810-31422913)
chr7 (25-85)||(11277119-11277179)
chr7 (26-85)||(4937995-4938054)
chr7 (25-118)||(37919757-37919850)
[»] chr4 (11 HSPs)
chr4 (25-112)||(54482999-54483086)
chr4 (25-85)||(15740434-15740494)
chr4 (26-112)||(11587038-11587124)
chr4 (5-53)||(45472608-45472656)
chr4 (25-85)||(47685762-47685822)
chr4 (26-85)||(1828407-1828466)
chr4 (26-85)||(23642458-23642517)
chr4 (25-82)||(19755480-19755537)
chr4 (25-82)||(19784269-19784326)
chr4 (25-118)||(48312308-48312401)
chr4 (26-86)||(46145889-46145949)
[»] scaffold0472 (1 HSPs)
scaffold0472 (25-84)||(3465-3524)
[»] scaffold0034 (1 HSPs)
scaffold0034 (26-85)||(105710-105769)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 30732318 - 30732418
Alignment:
Q  123 tatataagttgttaattaagtttgctaatactaattactaagcttgaatgagtatataaactgcactatatactagtaattttaacacgtattttatgat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732318 tatataagttgttaattaagtttgctaatactaattactaagcttgaatgagtatataaactgcactatatactagtaattttaacacgtattttatgat 30732417  T
Q  223 a 223  Q
    |    
T  30732418 a 30732418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 29523690 - 29523579
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||| ||||||||||    
T  29523690 ccacctatctgtttctatttcctgcaaagtaactgtcagtaataaatccctacactctactagcaattcctcctcccatacccataaacaacgacgccac 29523591  T
Q  107 tgccacaccccc 118  Q
    |||||| |||||    
T  29523590 tgccacgccccc 29523579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 19890871 - 19890984
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||| ||| |  |||||||||||  ||||| ||||||||||||| ||||||| ||| ||  ||||||||||| | ||||||| |||| ||||    
T  19890871 atccacctgtctgtttctaattcctgcaaagagactgttagtaataaatccccacactcttctaccaggtcctcctcccacacccataaatgacgtcgcc 19890970  T
Q  105 actgccacaccccc 118  Q
    |||||||| |||||    
T  19890971 actgccacgccccc 19890984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 963089 - 962997
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacaccccc 118  Q
    ||||||||||||||||| |||||||| |||||||||||  ||| ||| || |||||||||| ||| || || ||||||||||||||| |||||    
T  963089 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaattcttcctcccaaacccacaagcggcgacgccactgccacgccccc 962997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 48569966 - 48569879
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||  ||||| |||| |||| ||||||||||  ||| ||| ||||||||||| | ||||||||| |||||||||||||||    
T  48569966 ttcctgcaaagagactgttagtagtaaagccctacactcctctaccaagtcctcctcccacacccataaacggcgacgccactgccac 48569879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 3141066 - 3141158
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacaccccc 118  Q
    ||||||||||||||||| |||||||  |||||||||||  ||| |||||| ||||||||||  || || || | |||||||||||||| ||||    
T  3141066 tcctgcaaagtaactgtaagtaatagttccctacactcctctaccaactcttcctcccaaactcacaagcggcaacgccactgccacatcccc 3141158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 34332742 - 34332682
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||||||| ||||||||||  ||| ||||||||||||||||    
T  34332742 ttcctgcaaagaaactgttagtaataaaaccctacactcctctaccaactcctcctcccaa 34332682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 2364490 - 2364550
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  2364490 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 2364550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 7312989 - 7313049
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  7312989 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 7313049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 19920156 - 19920096
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  19920156 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 19920096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 10323497 - 10323438
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  10323497 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 10323438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 2756056 - 2756137
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccact 107  Q
    ||||||||||||| ||| |||||||  |||||||||||  |||  ||||| |||||||||| ||| || || ||||||||||    
T  2756056 tcctgcaaagtaagtgtaagtaatagttccctacactcctctacaaactcttcctcccaaacccacaagcggcgacgccact 2756137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 11204012 - 11204061
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaac-tgtcagtaataaat 53  Q
    |||||||||||| ||| ||||||||||||||| || ||||||||||||||    
T  11204012 atccacctgtctgtttctgtttcctgcaaagtgacatgtcagtaataaat 11204061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 33496742 - 33496787
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaa 52  Q
    |||||||||| ||| ||||||||||||||  |||||||||||||||    
T  33496742 ccacctgtctgtttctgtttcctgcaaagagactgtcagtaataaa 33496787  T

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Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 17573602 - 17573489
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||  ||| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  17573602 atccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaattcctcctcccatacccataaacgacgacgcc 17573503  T
Q  105 actgccacaccccc 118  Q
    ||||||||||||||    
T  17573502 actgccacaccccc 17573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 21630058 - 21629941
Alignment:
Q  1 ccatatccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacga 100  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||      
T  21630058 ccatatccacctgtctgtttctgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaattcctcctcccatacccataaacgacac 21629959  T
Q  101 cgccactgccacaccccc 118  Q
    || ||||||||| |||||    
T  21629958 cgtcactgccacgccccc 21629941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 10577194 - 10577083
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||||||||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||    
T  10577194 ccacctgtctgtttctgtttcctgcaaagagactgtcagtaataaatccctacactctactagcaattcctcctcccatacccataaacgacgacgccac 10577095  T
Q  107 tgccacaccccc 118  Q
    |||||| |||||    
T  10577094 tgccacgccccc 10577083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 17606281 - 17606168
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||  ||| || |||||||||||| | ||||| |||||||||||||||||||||||| || ||||||||||| | |||||||||||  || |    
T  17606281 atccacctgtcagtttctgattcctgcaaagtgaatgtcaataataaatccctacactctactaaaaattcctcctcccatacccataaacgacaccgtc 17606182  T
Q  105 actgccacaccccc 118  Q
    |||||||| |||||    
T  17606181 actgccacgccccc 17606168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 20882978 - 20882867
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||||||||| ||| || |||||||||||  ||||| |||||||||||||||||| || ||| ||  |||||||||||   ||||||||||||||||||     
T  20882978 ccacctgtctgtttctgattcctgcaaagagactgttagtaataaatccctacacccttctaccaggtcctcctcccacgcccataaacgacgacgccaa 20882879  T
Q  107 tgccacaccccc 118  Q
    ||||||||||||    
T  20882878 tgccacaccccc 20882867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 13937914 - 13938000
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    ||||||||||||||||| |||||||| |||||||||||  ||| |||||| |||||||||| ||| || || |||||||||||||||    
T  13937914 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaactcttcctcccaaacccacaagcggcgacgccactgccac 13938000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 21168412 - 21168472
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||||||| ||||||||||  ||| ||||||||||||||||    
T  21168412 ttcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaa 21168472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 15958740 - 15958653
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    ||||||||||| |||||||||||||||| ||||||| ||  ||||||| |  |||| |||   |||||||||||||||| ||||||||    
T  15958740 ttcctgcaaagaaactgtcagtaataaaaccctacattcctctaacaagttttcctaccacgcccataaacgacgacgcaactgccac 15958653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 11462602 - 11462659
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactct 64  Q
    |||||||| | |||||| |||||||||||  ||||| |||||||||||||||||||||    
T  11462602 ccacctgtttgtttttgattcctgcaaagagactgttagtaataaatccctacactct 11462659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 14372918 - 14372880
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactc 63  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  14372918 ttcctgcaaagaaactgtcagtaataaagccctacactc 14372880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 8300129 - 8300016
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||  ||| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  8300129 atccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaattcctcctcccatacccataaacgacgacgcc 8300030  T
Q  105 actgccacaccccc 118  Q
    |||||||| |||||    
T  8300029 actgccacgccccc 8300016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 25857371 - 25857258
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||  ||| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  25857371 atccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaattcctcctcccatacccataaacgacgacgcc 25857272  T
Q  105 actgccacaccccc 118  Q
    |||||||| |||||    
T  25857271 actgccacgccccc 25857258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27767231 - 27767295
Alignment:
Q  1 ccatatccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactcta 65  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  27767231 ccatatccacctgtctgtttctgtttcctgcaaagtaactgtcagtaagaaatccctacactcta 27767295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 10776960 - 10777071
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||||||||| |||  ||||||| |||||  | ||||||||||||||| ||||||||||||| ||  ||||||||||| | |||||||| |||||||| |    
T  10776960 ccacctgtctgtttccgtttcctacaaagagattgtcagtaataaatctctacactctactagcagttcctcctcccatacccataaaccacgacgccgc 10777059  T
Q  107 tgccacaccccc 118  Q
    |||||| |||||    
T  10777060 tgccacgccccc 10777071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 33169872 - 33169964
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacaccccc 118  Q
    ||||||||||||||||| |||||||| |||||||||||  ||| |||||| |||||||||| ||| || || || |||||||||||| |||||    
T  33169872 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaactcgtcctcccaaacccacaagcggcgtcgccactgccacgccccc 33169964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 24408142 - 24408234
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacaccccc 118  Q
    ||||||||||||||||| |||||||  |||||||||||  ||| |||||| |||||||||  ||| || ||||||||||||| |||| |||||    
T  24408142 tcctgcaaagtaactgtaagtaatagttccctacactcctctaccaactcttcctcccaagcccacaagcgacgacgccactaccacgccccc 24408234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 27795696 - 27795783
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    ||||| ||||| |||||| ||||||||| ||||||||||  ||| ||| ||||||||||| | |||||| || |||||||||||||||    
T  27795696 ttcctccaaagaaactgttagtaataaagccctacactcctctaccaagtcctcctcccacacccataatcggcgacgccactgccac 27795783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 30732241 - 30732181
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  30732241 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 30732181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 42513934 - 42513993
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  42513934 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 42513993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 23238597 - 23238655
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctccc 83  Q
    ||||||||||| |||||| || |||||| ||||||||||  ||| ||||||||||||||    
T  23238597 ttcctgcaaagaaactgttagcaataaagccctacactcctctaccaactcctcctccc 23238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 12825412 - 12825472
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||| ||||||    
T  12825412 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcatcccaa 12825472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 20824489 - 20824602
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||  ||| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  20824489 atccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaattcctcctcccatacccataaacgacgacgcc 20824588  T
Q  105 actgccacaccccc 118  Q
    ||| |||| |||||    
T  20824589 actaccacgccccc 20824602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 2170537 - 2170648
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||| ||||| ||| |||||||| |||||  ||||| ||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||    
T  2170537 ccacatgtctgtttctgtttcctacaaagagactgttagtaataaatccctacactctactagcaattcctcctcccatacccataaacgacgacgccac 2170636  T
Q  107 tgccacaccccc 118  Q
    || ||| |||||    
T  2170637 tgtcacgccccc 2170648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 17699677 - 17699787
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||||||||| ||| | ||||||||||||  | |||||||| |||||||||||||||||||| ||  ||||||||||| | |||||||||||||||||||    
T  17699677 ccacctgtctgtttctatttcctgcaaagagattgtcagta-taaatccctacactctactagcagttcctcctcccatacccataaacgacgacgccac 17699775  T
Q  107 tgccacaccccc 118  Q
    |||||| |||||    
T  17699776 tgccacgccccc 17699787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 43270648 - 43270752
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    ||||||||||  || ||||||||||||||  ||||| |||||||||||| |||||||||||| ||  ||||||| ||| | |||||||||||||||||||    
T  43270648 ccacctgtctgattctgtttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctccttccatacccataaacgacgacgccac 43270747  T
Q  107 tgcca 111  Q
    |||||    
T  43270748 tgcca 43270752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 13200297 - 13200365
Alignment:
Q  44 agtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||| |||||||  ||| ||||||||||||||| | |||||||||||| ||||||||||||    
T  13200297 agtaataaatccatacactcctctaccaactcctcctcccacacccataaacgacgtcgccactgccac 13200365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 13879414 - 13879327
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||  ||||| ||||||||| ||||||||||  ||| ||| ||||||||||| | |||||| || |||||||||||||||    
T  13879414 ttcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctcctcccacacccataaccggcgacgccactgccac 13879327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 25090600 - 25090687
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||  ||||| ||||||||| ||||||||||  ||| ||| | ||||||||| | | ||||||| |||||||||||||||    
T  25090600 ttcctgcaaagagactgttagtaataaagccctacactcctctaccaatttctcctcccacaccaataaacggcgacgccactgccac 25090687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 8300016 - 8300097
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||  ||| || || |||||||||    
T  8300016 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 8300097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 13396601 - 13396661
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| || ||| ||||||||| ||||||||||  ||| ||||||||||||||||    
T  13396601 ttcctgcaaagaaattgttagtaataaaaccctacactcctctaccaactcctcctcccaa 13396661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 41665296 - 41665236
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||| |||| |||||| ||||||||| ||||||||||  ||| ||||||||||||||||    
T  41665296 ttcctgtaaagaaactgttagtaataaaaccctacactcctctaccaactcctcctcccaa 41665236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 7924600 - 7924659
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  7924600 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 7924659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 32266775 - 32266834
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctccca 84  Q
    ||||||||||| |||||| || |||||| ||||||||||  ||| |||||||||||||||    
T  32266775 ttcctgcaaagaaactgttagcaataaagccctacactcctctaccaactcctcctccca 32266834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 42177516 - 42177429
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||  ||| | ||||||||||||||||||||| ||| |   |||||| |||| | |||||||||| | ||||||||||||    
T  42177516 ttcctgcaaagagactattagtaataaatccctacactcttctaccgggtcctccacccacacccataaacgatgccgccactgccac 42177429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 28993115 - 28993070
Alignment:
Q  66 ctaacaactcctcctcccaaatccataaacgacgacgccactgcca 111  Q
    |||||||||||||||||||| |||| || || ||||||||||||||    
T  28993115 ctaacaactcctcctcccaagtccacaaccgccgacgccactgcca 28993070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 16917756 - 16917643
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||  ||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||||||    
T  16917756 atccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaattccttctcccatacccataaacgacgacgcc 16917657  T
Q  105 actgccacaccccc 118  Q
    |||||||| |||||    
T  16917656 actgccacgccccc 16917643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 43388560 - 43388673
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||| |    
T  43388560 atccacctgtctgtttctgtttcctgcaaagtgactgtcagtaataaatccctacactctactagcaattcctcctcccatacccataaacgacgacgtc 43388659  T
Q  105 actgccacaccccc 118  Q
    ||| |||| |||||    
T  43388660 actaccacgccccc 43388673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 2491429 - 2491518
Alignment:
Q  29 tgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacaccccc 118  Q
    |||||||||||||| |||||||   ||||||||||  ||| |||||| |||||||||  ||| ||||||||||||||||||||| |||||    
T  2491429 tgcaaagtaactgtaagtaatagtaccctacactcctctaccaactcttcctcccaagcccacaaacgacgacgccactgccacgccccc 2491518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 11909032 - 11908972
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  11909032 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 11908972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 6050817 - 6050876
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  6050817 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 6050876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 47623004 - 47622914
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacacc 115  Q
    ||||||||||  | |||||||||||||| || |||||||  ||| ||  |||||||||||   |||||| ||||||||||||| |||||||    
T  47623004 ttcctgcaaaaaagctgtcagtaataaagccttacactcctctaccaggtcctcctcccacgcccataaccgacgacgccactaccacacc 47622914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 35541262 - 35541343
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    ||||||||||  |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||  ||| || || |||||||||    
T  35541262 ttcctgcaaaaaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 35541343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 14439956 - 14440044
Alignment:
Q  22 tgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgcc 110  Q
    ||||||||||||||  ||||| |||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  14439956 tgtttcctgcaaagagactgttagtaataaatccatacactctactaacaattcctcctcccatacccataaacgacgacgccactgcc 14440044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 12645731 - 12645836
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||||||||  ||| ||||||||||||||  | ||| ||||||||||||||||||||  ||| ||| ||||||| ||| | |||||||||||| ||||||    
T  12645731 ccacctgtcagtttctgtttcctgcaaagagattgttagtaataaatccctacactcctctaccaaatcctccttccacacccataaacgacgtcgccac 12645830  T
Q  107 tgccac 112  Q
    ||||||    
T  12645831 tgccac 12645836  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 40176881 - 40176968
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||  ||||| ||||||||| ||||||||||  ||| ||| ||||||||||| | |||||| || |||||||||||||||    
T  40176881 ttcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctcctcccacacccataaccggcgacgccactgccac 40176968  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 38604309 - 38604219
Alignment:
Q  22 tgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||||| |||||| |||| ||||| |||||||||  ||| ||| || |||||||| | |||||||| |||  |||||||||||    
T  38604309 tgtttcctgcaaagaaactgtaagtactaaattcctacactcctctaccaagtcttcctcccacacccataaactacggtgccactgccac 38604219  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 21517725 - 21517696
Alignment:
Q  55 cctacactctactaacaactcctcctccca 84  Q
    ||||||||||||||||||||||||||||||    
T  21517725 cctacactctactaacaactcctcctccca 21517696  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 12525181 - 12525213
Alignment:
Q  52 atccctacactctactaacaactcctcctccca 84  Q
    |||||||||||| ||||||||||||||||||||    
T  12525181 atccctacactccactaacaactcctcctccca 12525213  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 37254953 - 37255064
Alignment:
Q  7 ccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccac 106  Q
    |||||||||| ||| |  |||||||||||    ||| ||||||||||||||||||||| ||| ||| ||||||||||| | |||||| ||||| ||||||    
T  37254953 ccacctgtctgtttctaattcctgcaaagagtttgttagtaataaatccctacactcttctaccaagtcctcctcccacacccataaccgacggcgccac 37255052  T
Q  107 tgccacaccccc 118  Q
    |||||| |||||    
T  37255053 tgccacgccccc 37255064  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 25619658 - 25619771
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgcc 104  Q
    |||||||||||| ||| || |||||||||||   |||| |||||||||||| |||||||| ||| ||  ||||||||||| | |||||||||| | ||||    
T  25619658 atccacctgtctgtttctgattcctgcaaagagtctgttagtaataaatccttacactcttctaccaggtcctcctcccacacccataaacgatgccgcc 25619757  T
Q  105 actgccacaccccc 118  Q
    ||| |||| |||||    
T  25619758 actaccacgccccc 25619771  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 31422810 - 31422913
Alignment:
Q  18 tttttgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacacccc 117  Q
    |||||| |||||||||||   |||| |||||||||| | |||||||  ||| ||| || |||||||| | ||||||||||||| ||||||||||| |||     
T  31422810 tttttgattcctgcaaagagtctgttagtaataaattcatacactcctctaccaagtcatcctcccacacccataaacgacgatgccactgccacgccca 31422909  T
Q  118 cacc 121  Q
    ||||    
T  31422910 cacc 31422913  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 11277179 - 11277119
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| || |||||| ||||||||||  ||| ||||||||||||||||    
T  11277179 ttcctgcaaagaaactgttagcaataaagccctacactcctctaccaactcctcctcccaa 11277119  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 4938054 - 4937995
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  4938054 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 4937995  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 37919757 - 37919850
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacaccccc 118  Q
    ||||||||||| |||||| ||||||||| | ||||||||  ||| ||||| ||||||||||  ||| || || | ||||||| || ||||||||    
T  37919757 ttcctgcaaagaaactgttagtaataaaactctacactcctctaccaacttctcctcccaagcccacaaccgcctacgccaccgcaacaccccc 37919850  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 54483086 - 54482999
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||||  ||||| ||||||||| ||||||||||  ||| ||| ||||||||||| | |||||| || |||||||||||||||    
T  54483086 ttcctgcaaagagactgttagtaataaacccctacactcctctaccaaatcctcctcccacacccataaccggcgacgccactgccac 54482999  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 15740434 - 15740494
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||||||| ||||||||||  ||| ||||||||||||||||    
T  15740434 ttcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaa 15740494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 11587124 - 11587038
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccac 112  Q
    |||||||||| |||||||||||||||| ||||||| ||  |||| |  | |||||| || | |||||||||||| ||||||||||||    
T  11587124 tcctgcaaagaaactgtcagtaataaagccctacattcctctaataggttctcctctcacacccataaacgacggcgccactgccac 11587038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 45472656 - 45472608
Alignment:
Q  5 atccacctgtctatttttgtttcctgcaaagtaactgtcagtaataaat 53  Q
    |||||||||||| ||| ||||||||||||||| | ||||||||||||||    
T  45472656 atccacctgtctgtttctgtttcctgcaaagtgattgtcagtaataaat 45472608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 47685822 - 47685762
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    ||||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  47685822 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 47685762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 1828466 - 1828407
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||||||| |||| |||||  ||| ||||||||||||||||    
T  1828466 tcctgcaaagaaactgttagtaataaagccctccactcctctaccaactcctcctcccaa 1828407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 23642517 - 23642458
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  23642517 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 23642458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 19755480 - 19755537
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcc 82  Q
    ||||||||||| |||| | ||||||||| ||||||||||  ||| |||||||||||||    
T  19755480 ttcctgcaaagaaactattagtaataaaaccctacactcctctaccaactcctcctcc 19755537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 19784326 - 19784269
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcc 82  Q
    ||||||||||| |||| | ||||||||| ||||||||||  ||| |||||||||||||    
T  19784326 ttcctgcaaagaaactattagtaataaaaccctacactcctctaccaactcctcctcc 19784269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 48312308 - 48312401
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaatccataaacgacgacgccactgccacaccccc 118  Q
    ||||||||||   ||||| ||||||||| ||||||||||  ||| ||| |||||||| || | | |||| || ||||||||||||||| |||||    
T  48312308 ttcctgcaaatagactgttagtaataaagccctacactcctctaccaagtcctcctcacacaccaataaccggcgacgccactgccacgccccc 48312401  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 46145889 - 46145949
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaaa 86  Q
    ||||||||||||||||| |||||||  |||||||||||  ||  |||||| ||||||||||    
T  46145889 tcctgcaaagtaactgtaagtaatagttccctacactcctctgccaactcttcctcccaaa 46145949  T

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Target: scaffold0472 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 3465 - 3524
Alignment:
Q  25 ttcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctccca 84  Q
    |||||| |||| |||||| ||||||||| ||||||||||  ||| |||||||||||||||    
T  3465 ttcctgtaaagaaactgttagtaataaagccctacactcctctaccaactcctcctccca 3524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 105769 - 105710
Alignment:
Q  26 tcctgcaaagtaactgtcagtaataaatccctacactctactaacaactcctcctcccaa 85  Q
    |||||||||| |||||| ||||| ||| ||||||||||  ||| ||||||||||||||||    
T  105769 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaa 105710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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