View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_40 (Length: 240)
Name: NF9377_low_40
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_40 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 865 - 1015
Alignment:
| Q |
74 |
taatatttaatttactgtacattggaataaatctctatcctccttatgactccataaagcctttgaaaccggttgttggaaaatggttcaaacttccaaa |
173 |
Q |
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| T |
865 |
taatatttaatttactatacattggaataaagctctatcctccttatgactccacaaagcctttgaaaccagttgttggaaaatgcttcaaacttccaaa |
964 |
T |
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| Q |
174 |
acaagtctattagtcactcaaaccaccaaccgcagttgaaagtgtagaaaa |
224 |
Q |
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| T |
965 |
ccaagtctattagttactcaaaacaccaaccgcagttgaaagtgaagaaaa |
1015 |
T |
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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 55496266 - 55496325
Alignment:
| Q |
1 |
ttgtttttgaaagattgtataagttgttgatgaaggttttaactaagagattagaaggag |
60 |
Q |
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| T |
55496266 |
ttgttttggaaagattgtataacttgttgatgaaggttttaactaagagattagaaggag |
55496325 |
T |
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