View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9377_low_41 (Length: 240)

Name: NF9377_low_41
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9377_low_41
NF9377_low_41
[»] chr5 (14 HSPs)
chr5 (18-240)||(12448545-12448767)
chr5 (145-204)||(8761928-8761987)
chr5 (145-215)||(34032125-34032195)
chr5 (115-226)||(14042434-14042545)
chr5 (151-198)||(14475052-14475099)
chr5 (145-216)||(22873472-22873543)
chr5 (156-215)||(27016683-27016742)
chr5 (145-203)||(11020720-11020778)
chr5 (156-214)||(32017454-32017512)
chr5 (156-217)||(5356331-5356392)
chr5 (192-229)||(16636684-16636721)
chr5 (145-217)||(26663636-26663708)
chr5 (145-217)||(26935231-26935303)
chr5 (161-229)||(40872257-40872325)
[»] chr8 (23 HSPs)
chr8 (136-215)||(11041059-11041138)
chr8 (145-213)||(45368760-45368828)
chr8 (121-214)||(30534995-30535088)
chr8 (159-234)||(6270333-6270408)
chr8 (148-211)||(35592443-35592506)
chr8 (190-229)||(36907846-36907885)
chr8 (145-198)||(7691360-7691413)
chr8 (145-217)||(27055911-27055983)
chr8 (139-199)||(33910730-33910792)
chr8 (154-229)||(40628988-40629063)
chr8 (156-219)||(41385277-41385340)
chr8 (155-229)||(12002278-12002352)
chr8 (151-229)||(18842276-18842354)
chr8 (155-213)||(39932714-39932772)
chr8 (156-217)||(28313570-28313630)
chr8 (145-222)||(32271171-32271248)
chr8 (196-229)||(33865219-33865252)
chr8 (164-229)||(39691135-39691200)
chr8 (162-215)||(42760182-42760235)
chr8 (194-235)||(44024062-44024103)
chr8 (156-219)||(7931726-7931790)
chr8 (155-215)||(36348524-36348584)
chr8 (145-217)||(42801079-42801151)
[»] chr2 (23 HSPs)
chr2 (150-229)||(13197257-13197335)
chr2 (145-217)||(3882617-3882689)
chr2 (145-229)||(8964393-8964477)
chr2 (145-229)||(9049171-9049255)
chr2 (190-229)||(15806061-15806100)
chr2 (155-229)||(2825977-2826051)
chr2 (151-229)||(37284907-37284985)
chr2 (163-215)||(4616858-4616909)
chr2 (145-193)||(41079463-41079511)
chr2 (174-229)||(11278763-11278818)
chr2 (183-229)||(3191199-3191245)
chr2 (161-219)||(14541187-14541244)
chr2 (160-206)||(27410225-27410270)
chr2 (145-203)||(33275940-33275998)
chr2 (191-229)||(44838663-44838701)
chr2 (145-190)||(11742165-11742210)
chr2 (145-206)||(44195508-44195569)
chr2 (185-226)||(45255482-45255523)
chr2 (145-217)||(4238358-4238430)
chr2 (145-229)||(9153495-9153579)
chr2 (177-229)||(14295661-14295713)
chr2 (146-213)||(34356598-34356663)
chr2 (145-229)||(36051955-36052038)
[»] chr1 (23 HSPs)
chr1 (145-215)||(25095610-25095680)
chr1 (145-219)||(45753451-45753525)
chr1 (145-217)||(40203111-40203183)
chr1 (145-225)||(46917858-46917936)
chr1 (134-225)||(28171507-28171598)
chr1 (145-219)||(5115637-5115711)
chr1 (151-199)||(5597723-5597771)
chr1 (145-217)||(31652624-31652695)
chr1 (145-229)||(44442251-44442335)
chr1 (158-225)||(2351397-2351464)
chr1 (145-228)||(31043002-31043085)
chr1 (140-206)||(5423790-5423856)
chr1 (145-199)||(6285847-6285901)
chr1 (145-215)||(33744170-33744240)
chr1 (140-217)||(34596153-34596228)
chr1 (155-229)||(39973903-39973977)
chr1 (155-215)||(3338061-3338122)
chr1 (177-229)||(11109532-11109584)
chr1 (185-229)||(15549648-15549692)
chr1 (165-229)||(38172666-38172730)
chr1 (145-217)||(39241439-39241511)
chr1 (173-229)||(48454604-48454660)
chr1 (147-215)||(50974609-50974677)
[»] chr4 (19 HSPs)
chr4 (160-229)||(41370189-41370258)
chr4 (175-229)||(44570125-44570179)
chr4 (122-215)||(33982403-33982496)
chr4 (190-235)||(49795190-49795235)
chr4 (162-213)||(23230272-23230324)
chr4 (145-213)||(50343873-50343941)
chr4 (140-215)||(1696223-1696298)
chr4 (184-227)||(17317525-17317568)
chr4 (157-219)||(36721617-36721680)
chr4 (145-219)||(52373075-52373150)
chr4 (190-229)||(53261604-53261643)
chr4 (156-218)||(41956462-41956524)
chr4 (145-202)||(4850631-4850688)
chr4 (146-215)||(31871090-31871159)
chr4 (162-215)||(35180640-35180693)
chr4 (145-218)||(45743316-45743389)
chr4 (189-229)||(4392014-4392054)
chr4 (185-229)||(16556008-16556052)
chr4 (145-197)||(51736706-51736758)
[»] scaffold0121 (1 HSPs)
scaffold0121 (151-215)||(28810-28874)
[»] chr7 (18 HSPs)
chr7 (140-219)||(37352442-37352521)
chr7 (145-215)||(7596181-7596252)
chr7 (156-218)||(31902781-31902843)
chr7 (162-215)||(16878725-16878778)
chr7 (145-218)||(18926328-18926401)
chr7 (140-217)||(38452167-38452244)
chr7 (156-215)||(33887887-33887946)
chr7 (140-226)||(5248091-5248177)
chr7 (155-229)||(8237961-8238035)
chr7 (175-229)||(34398096-34398150)
chr7 (156-198)||(37129864-37129906)
chr7 (157-219)||(40722372-40722434)
chr7 (55-105)||(45033814-45033864)
chr7 (155-228)||(676395-676467)
chr7 (162-215)||(8920738-8920791)
chr7 (176-217)||(15995921-15995962)
chr7 (145-218)||(24299163-24299236)
chr7 (140-216)||(36015039-36015115)
[»] chr3 (16 HSPs)
chr3 (139-223)||(37359461-37359546)
chr3 (156-224)||(37744993-37745061)
chr3 (151-215)||(53433221-53433285)
chr3 (154-229)||(37388417-37388492)
chr3 (145-215)||(37708438-37708508)
chr3 (145-234)||(45757930-45758019)
chr3 (156-215)||(30463992-30464051)
chr3 (161-215)||(31419226-31419278)
chr3 (145-219)||(43749505-43749579)
chr3 (155-229)||(48551051-48551125)
chr3 (151-229)||(51039762-51039840)
chr3 (145-206)||(4824657-4824718)
chr3 (140-217)||(19898135-19898212)
chr3 (156-215)||(1511346-1511406)
chr3 (161-229)||(25299058-25299126)
chr3 (145-229)||(53040470-53040554)
[»] chr6 (4 HSPs)
chr6 (145-215)||(7465478-7465548)
chr6 (145-217)||(12307826-12307898)
chr6 (145-229)||(31702761-31702845)
chr6 (190-229)||(3769338-3769378)
[»] scaffold0427 (1 HSPs)
scaffold0427 (158-215)||(2401-2458)
[»] scaffold0010 (1 HSPs)
scaffold0010 (190-223)||(26747-26780)
[»] scaffold0009 (1 HSPs)
scaffold0009 (145-198)||(189070-189123)
[»] scaffold0608 (1 HSPs)
scaffold0608 (177-229)||(4969-5021)
[»] scaffold0037 (1 HSPs)
scaffold0037 (177-229)||(35295-35347)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 12448545 - 12448767
Alignment:
Q  18 atgtatttaggtttggacatgtatgaagggataacatcacttatcttatagtggagagtgattaaaaagtcttggtagacatgattaccggaatgactct 117  Q
    |||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||| ||| | | |||||||||    
T  12448545 atgtatctaggtttggacatgcatggagggataacaccacttatcttatagtggagtgtgattcaaaggtcttggtagacataattccagaaatgactct 12448644  T
Q  118 tactaacgagtgactctcgggtattccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  12448645 tactaacgagtgactatcgagtactccttaaggattttaaaataagaaattattcaataaaaaagttaaatatttcaattttcaatgcaatgattacaca 12448744  T
Q  218 aacttttataaacaaatttccat 240  Q
    |||||||||||||||||||||||    
T  12448745 aacttttataaacaaatttccat 12448767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 8761928 - 8761987
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatg 204  Q
    ||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  8761928 ttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattttcaatg 8761987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 34032195 - 34032125
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||| ||| ||||||||| ||||||||  |||||| |||||||||||||||||  || ||||||||||||    
T  34032195 ttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttcaaaggcaatgattaca 34032125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 14042434 - 14042545
Alignment:
Q  115 tcttactaacgagtgactctcgggtattccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattac 214  Q
    ||||||||||||||| |||  || || || |||| |||| |||||||| ||||||||   |||||| || ||||||||  |||| ||||||| ||||||     
T  14042434 tcttactaacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattgattat 14042533  T
Q  215 acaaacttttat 226  Q
    ||||| ||||||    
T  14042534 acaaatttttat 14042545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 14475099 - 14475052
Alignment:
Q  151 attttaaaataagaaattattccataaaaaggttaaatatttcaattt 198  Q
    ||||||||| |||||||||||| ||||||| || ||||||||||||||    
T  14475099 attttaaaagaagaaattattctataaaaatgtcaaatatttcaattt 14475052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 22873472 - 22873543
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacac 216  Q
    ||||| ||||||||||||  ||||||||  |||||| ||||||||||| |||||| |||||| ||| |||||    
T  22873472 ttaagtattttaaaataaagaattattctttaaaaaagttaaatattttaatttttaatgcattgaatacac 22873543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 27016683 - 27016742
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||| |||||||||||||||||||| || ||| |||||||||| |||||||  |||||||    
T  27016683 aaaagaagaaattattccataaaaaagtcaaaaatttcaatttccaatgcatcgattaca 27016742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 11020720 - 11020778
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaat 203  Q
    ||||||||| |||||||||||| ||||||||| ||| || || || |||||||||||||    
T  11020720 ttaaggattataaaataagaaagtattccatataaaagtcaagtaattcaattttcaat 11020778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 32017512 - 32017454
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattac 214  Q
    |||| ||| ||||||||  |||||| || |||||||||||||||||||||| |||||||    
T  32017512 aaaacaagcaattattctttaaaaaagtaaaatatttcaattttcaatgcattgattac 32017454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 5356392 - 5356331
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||||||||||||| |  ||||||| || ||||||||| |||||| ||||| ||||||||||    
T  5356392 aaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacaca 5356331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 16636721 - 16636684
Alignment:
Q  192 tcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  16636721 tcaattttcaatgcactaattacacaaacttttataaa 16636684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 26663636 - 26663708
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||| ||| |||||||||||||||||   |||||| || ||||||||| |||| ||||| | ||||||||||    
T  26663636 ttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacaca 26663708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 26935231 - 26935303
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||| ||| |||||||||||||||||   |||||| || ||||||||| |||| ||||| | ||||||||||    
T  26935231 ttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacaca 26935303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 40872257 - 40872325
Alignment:
Q  161 aagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||||||  ||||||||||||| | | |||||| ||||||| ||||| || ||||||| |||||    
T  40872257 aagaaattattctttaaaaaggttaaaaactccaatttccaatgcattgatttcataaactttgataaa 40872325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 11041059 - 11041138
Alignment:
Q  136 gggtattccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||||||| ||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  11041059 gggtattctttaagcattttaaaatgagaaatcattccataaaaaagttaaatatttcaattttcaatacaatgattaca 11041138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 45368828 - 45368760
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgatta 213  Q
    |||||||||  |||| |||||||||||  ||||||| ||||||||||||||||||| ||||||||||||    
T  45368828 ttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgatta 45368760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 30534995 - 30535088
Alignment:
Q  121 taacgagtgactctcgggtattccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattac 214  Q
    ||||||||| |||| | ||| || ||||| ||| |||||  |||||||||||||||||||  | |||| ||||||||||||||||| |||||||    
T  30534995 taacgagtgtctctggagtactctttaagcattctaaaaggagaaattattccataaaaaaatcaaatgtttcaattttcaatgcattgattac 30535088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 6270333 - 6270408
Alignment:
Q  159 ataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaacaaat 234  Q
    ||||||||||||| |||||||  || |||||||||||||||||||  | | |||||||||| ||||||||| ||||    
T  6270333 ataagaaattatttcataaaactgtcaaatatttcaattttcaatatattaattacacaaatttttataaaaaaat 6270408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 35592443 - 35592506
Alignment:
Q  148 aggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgat 211  Q
    ||||||| |||||||||||||||| | |||||| || |||||||||||||| ||| ||||||||    
T  35592443 aggatttaaaaataagaaattatttcgtaaaaaagtcaaatatttcaatttccaaggcaatgat 35592506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 36907846 - 36907885
Alignment:
Q  190 tttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  36907846 tttcaatttccaatgcaatgattacacaaacttttataaa 36907885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 7691360 - 7691413
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattt 198  Q
    ||||| ||||||||| |||||||||||||||| |||  ||||||||||||||||    
T  7691360 ttaagcattttaaaagaagaaattattccatacaaaaattaaatatttcaattt 7691413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 27055911 - 27055983
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||| ||||||||||||||||||||| || || || ||||||| |||| |||| ||||| | ||||||||||    
T  27055911 ttaagcattttaaaataagaaattatttcaaaagaaagttaaatgtttcgatttccaatgtattgattacaca 27055983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 33910730 - 33910792
Alignment:
Q  139 tattccttaaggattttaaaataagaaattattccat--aaaaaggttaaatatttcaatttt 199  Q
    ||||| ||||| ||||||||| ||||||||||| |||  ||||| ||||||||||||||||||    
T  33910730 tattctttaagcattttaaaagaagaaattatttcataaaaaaaagttaaatatttcaatttt 33910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 40629063 - 40628988
Alignment:
Q  154 ttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||| |||| ||||||||  |||||| ||||||  ||| ||||| |||| || ||||||||||||||||||||||    
T  40629063 ttaaattaagtaattattcattaaaaatgttaaagtttttaatttccaattcactgattacacaaacttttataaa 40628988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 41385277 - 41385340
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    |||||||||||||||||| ||| || || | || ||||||||||||||| | ||||||||||||    
T  41385277 aaaataagaaattattccttaagaaagtcagatgtttcaattttcaatgtattgattacacaaa 41385340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 12002278 - 12002352
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| |||| ||||||||  |||||| || |||  ||||||||| ||||||| |||||||||||| |||||||||    
T  12002278 taaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcactgattacacaaatttttataaa 12002352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 18842354 - 18842276
Alignment:
Q  151 attttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||| |||| ||||||||  |||||| || |||  ||| |||||| |||| | ||||||||||||||||||||||    
T  18842354 attttaaattaagtaattattctttaaaaatgtcaaagtttttaatttttaatgtattgattacacaaacttttataaa 18842276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 39932772 - 39932714
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgatta 213  Q
    ||||| ||| ||| |||||||||||| || |||||||||||||||| ||||||| ||||    
T  39932772 taaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgcaataatta 39932714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 28313630 - 28313570
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||||||||||| ||| ||||||   |||||||||||||||||||||| | ||||||||||    
T  28313630 aaaataagaaatttttc-ataaaatttttaaatatttcaattttcaatgtattgattacaca 28313570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 32271171 - 32271248
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaactt 222  Q
    ||||| |||||||| ||||||||||||   |||||| ||||||  |||||||||  ||| || |||||||||||||||    
T  32271171 ttaagcattttaaattaagaaattattttttaaaaatgttaaagttttcaatttctaattcattgattacacaaactt 32271248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 33865252 - 33865219
Alignment:
Q  196 ttttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||||||||||||||||||||||| |||||    
T  33865252 ttttcaatgcaatgattacacaaactttaataaa 33865219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 39691200 - 39691135
Alignment:
Q  164 aaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||||  |||||| || ||||| |||||||||||||||| ||| |||||||| ||| |||||    
T  39691200 aaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaa 39691135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 42760235 - 42760182
Alignment:
Q  162 agaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||||||||||||||||||  | |||| ||||||||| ||||||| ||||||||    
T  42760235 agaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgattaca 42760182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 44024062 - 44024103
Alignment:
Q  194 aattttcaatgcaatgattacacaaacttttataaacaaatt 235  Q
    ||||||||||||| ||||||||||||||| |||||| |||||    
T  44024062 aattttcaatgcactgattacacaaacttctataaaaaaatt 44024103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 7931726 - 7931790
Alignment:
Q  156 aaaataagaaattattccataaaaa-ggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    |||| |||||||||||| ||||||| ||| |||||||  ||||||||||| | ||||||||||||    
T  7931726 aaaagaagaaattattcaataaaaaaggtcaaatattataattttcaatgtattgattacacaaa 7931790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 36348584 - 36348524
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||| ||||||||  |||||| |||||| ||||  |||||||||||| ||||||||    
T  36348584 taaaataagcaattattctttaaaaaagttaaacattttgattttcaatgcattgattaca 36348524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 42801079 - 42801151
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||| ||| ||||||||| ||||||||  || ||| |  |||||||||||||||||||||| | ||||||||    
T  42801079 ttaagtattctaaaataagtaattattctttacaaaaggcaaatatttcaattttcaatgcattaattacaca 42801151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 13197257 - 13197335
Alignment:
Q  150 gattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||||||||||||||||| |||||||| || ||||||||||||||| |||||| | |||||| ||| |||||||||    
T  13197257 gattttaaaataagaaattatttcataaaaa-gtcaaatatttcaatttttaatgcattaattacataaatttttataaa 13197335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 3882617 - 3882689
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||| ||| ||||||||| ||||||||  ||||||||| |||||||||  ||||||||||| ||||||||||    
T  3882617 ttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgattacaca 3882689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 8964393 - 8964477
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||| ||| |||| |||| ||||||||  |||||| || |||||||||||||| ||||||| |||||||||||| ||| |||||    
T  8964393 ttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaa 8964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 9049255 - 9049171
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||| || ||||| |||| ||||||||  | |||| ||||||| ||||||||||||||||| | |||||||||| |||||||||    
T  9049255 ttaagcatgttaaattaagtaattattcttttaaaatgttaaatttttcaattttcaatgcattaattacacaaatttttataaa 9049171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 15806100 - 15806061
Alignment:
Q  190 tttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15806100 tttcaattttcaatgcattgattacacaaacttttataaa 15806061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 2826051 - 2825977
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||||||||||||   |||||| || ||||||||| |||| ||||||| |||||||||| | |||||||||    
T  2826051 taaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttttataaa 2825977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 37284985 - 37284907
Alignment:
Q  151 attttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||| |||| |||||||   ||||||  |||||| ||||||||||||||||||| ||||| ||||||| ||||||    
T  37284985 attttaaattaagtaattattttttaaaaatcttaaatttttcaattttcaatgcaataattacgcaaacttctataaa 37284907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 4616858 - 4616909
Alignment:
Q  163 gaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||| ||||||||    
T  4616858 gaaattatttcataaaaag-ttaaatattacaattttcaatgcattgattaca 4616909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 41079463 - 41079511
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttc 193  Q
    ||||| |||| |||||||||||||||||| |||||| ||||||||||||    
T  41079463 ttaagaatttcaaaataagaaattattccttaaaaaagttaaatatttc 41079511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 11278763 - 11278818
Alignment:
Q  174 ataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||| ||||||||||||||||||||||||| |  ||||||| | |||||||||    
T  11278763 ataaaaaagttaaatatttcaattttcaatgcattagttacacatatttttataaa 11278818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 3191199 - 3191245
Alignment:
Q  183 ttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||| |||||||||||| |||| |||||| |||||||||||||||    
T  3191199 ttaaatttttcaattttcattgcattgattatacaaacttttataaa 3191245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 14541187 - 14541244
Alignment:
Q  161 aagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    |||||||||||||||||||| |||| | ||| |||||||||||||| | ||||||||||    
T  14541187 aagaaattattccataaaaa-gttagacattgcaattttcaatgcattaattacacaaa 14541244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 27410270 - 27410225
Alignment:
Q  160 taagaaattattccataaaaaggttaaatatttcaattttcaatgca 206  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||    
T  27410270 taagaaattat-ccattaaaaagttaaatatttcaattttcaatgca 27410225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 33275998 - 33275940
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaat 203  Q
    ||||| ||| ||||| |||||||||||   |||||| ||||||||||||||||||||||    
T  33275998 ttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaat 33275940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 44838663 - 44838701
Alignment:
Q  191 ttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  44838663 ttcaattttcaatacattgattacacaaacttttataaa 44838701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 11742210 - 11742165
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatat 190  Q
    ||||||||||||||| |||||||||||| ||||||| || ||||||    
T  11742210 ttaaggattttaaaaaaagaaattattctataaaaaagtcaaatat 11742165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 44195508 - 44195569
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgca 206  Q
    ||||| |||||||| |||||||||||||  || ||| |||||||| |||||||| |||||||    
T  44195508 ttaagcattttaaattaagaaattattctttacaaaagttaaataattcaatttacaatgca 44195569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 45255482 - 45255523
Alignment:
Q  185 aaatatttcaattttcaatgcaatgattacacaaacttttat 226  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  45255482 aaatattacaattttcaatgcattgattacacaaatttttat 45255523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 4238430 - 4238358
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||||||||  |||| |||||||||||  |||||||  | ||||||||| |||||| ||||| ||||||||||    
T  4238430 ttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacaca 4238358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 9153579 - 9153495
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||||  ||| |||||||||||||  |||||| |  ||| | |||||||| ||||||| ||| |||||||| |||||||||    
T  9153579 ttaaggattccaaattaagaaattattctttaaaaaaggcaaacacttcaatttccaatgcattgaatacacaaatttttataaa 9153495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 14295661 - 14295713
Alignment:
Q  177 aaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||||| |||| |||||||||||||| ||| |||||||  |||||||||    
T  14295661 aaaaggttaactattacaattttcaatgcattgaatacacaactttttataaa 14295713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 34356663 - 34356598
Alignment:
Q  146 taaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgatta 213  Q
    |||||||| |||||||||| |||||| |||| ||  || |||||||||||||||||||| | ||||||    
T  34356663 taaggattctaaaataagatattatttcatataa--gtcaaatatttcaattttcaatgtattgatta 34356598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 36051955 - 36052038
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| |||| ||||||||||||||| || |||| ||  | |||||||| |||||| |||||| |||||| ||||| |||||||||    
T  36051955 ttaaagattctaaaataagaaatta-tcaataagaaaatcaaatattttaatttttaatgcattgattatacaaatttttataaa 36052038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 25095610 - 25095680
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||| ||||| ||||||||    
T  25095610 ttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgattaca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 45753451 - 45753525
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    |||| |||| ||||| ||||||||||| || ||||| || |||||||||||||||||||||| ||||||||||||    
T  45753451 ttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaa 45753525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 40203183 - 40203111
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||||||||  |||| ||||||||||| |||||||| || |||||||||||||| ||||||| ||||||||||    
T  40203183 ttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacaca 40203111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 46917858 - 46917936
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaactttta 225  Q
    ||||| |||||||||||| |||||||| | ||||||  |||||||||| ||||||||||  |||||||||||||| |||||    
T  46917858 ttaagaattttaaaataaaaaattatttcttaaaaaaattaaatattttaattttcaat--aatgattacacaaattttta 46917936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 28171598 - 28171507
Alignment:
Q  134 tcgggtattccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaactttta 225  Q
    |||||||||| ||||| |||  |||| || ||||||||  ||||||| |||||||||||||||||| |||||| | |||||| ||| |||||    
T  28171598 tcgggtattctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattacataaattttta 28171507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 5115711 - 5115637
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    ||||||||| ||||| || |||||||   ||||||| ||||||||||||||||| ||||||| | ||||||||||    
T  5115711 ttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaa 5115637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 5597723 - 5597771
Alignment:
Q  151 attttaaaataagaaattattccataaaaaggttaaatatttcaatttt 199  Q
    ||||||||| |||||||||||| ||||||| ||||||||||| ||||||    
T  5597723 attttaaaagaagaaattattctataaaaaagttaaatattttaatttt 5597771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 31652624 - 31652695
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||||||||| |||| |||||||||||  ||||||| || |||||||| ||||| | ||||||||||||||||    
T  31652624 ttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgattacaca 31652695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 44442251 - 44442335
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||| |||||||| || ||||||||||  |||||| || ||||||||||||||||||| || | | |||||| | |||||||||    
T  44442251 ttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaa 44442335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 2351397 - 2351464
Alignment:
Q  158 aataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaactttta 225  Q
    |||||||||||||| |||||||| || ||| |||| ||||| | ||||| |||||||| |||||||||    
T  2351397 aataagaaattatttcataaaaaagtcaaacattttaatttccgatgcattgattacataaactttta 2351464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 31043002 - 31043085
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataa 228  Q
    ||||| ||| |||| |||| |||||||   |||||| || |||  ||||||||||||||||| |||||||||||||||| ||||    
T  31043002 ttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattttcaatgcattgattacacaaactttcataa 31043085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 5423856 - 5423790
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgca 206  Q
    |||| ||||| |||||||| ||  |||||||||  |||||| |||||||| ||||||||||||||||    
T  5423856 attctttaagcattttaaattagaaaattattctttaaaaaagttaaatagttcaattttcaatgca 5423790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 6285847 - 6285901
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaatttt 199  Q
    ||||||||||||||||||||||||||||  |||||| || ||||| | |||||||    
T  6285847 ttaaggattttaaaataagaaattattctttaaaaaagtcaaatactacaatttt 6285901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 33744240 - 33744170
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||| ||||||||||||| |||||||   | |||| || ||||||||| |||||||||||| ||||||||    
T  33744240 ttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattaca 33744170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 34596228 - 34596153
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||| ||||||||| ||||| |||||||||||  ||||||   | ||||||||| |||||||||||| ||||||||||    
T  34596228 attcattaaggattctaaaagaagaaattattttataaaat--tcaaatatttcgattttcaatgcattgattacaca 34596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 39973903 - 39973977
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| |||| ||||||||  | |||| ||||||  ||||||||||||||||| |||||| ||||||||| |||||    
T  39973903 taaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgcattgattatacaaactttcataaa 39973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 3338122 - 3338061
Alignment:
Q  155 taaaataagaaattattccataaaaagg-ttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||| ||||||||||| ||||||||   |||| ||||||||||||||||||| ||||||||    
T  3338122 taaaagaagaaattatttcataaaaaaaattaagtatttcaattttcaatgcattgattaca 3338061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11109532 - 11109584
Alignment:
Q  177 aaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| |||||| |||| |||||||||| |||||| |||||| |||||||||||    
T  11109532 aaaaagttaaacattttaattttcaatacaatgaatacacatacttttataaa 11109584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 15549648 - 15549692
Alignment:
Q  185 aaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||| |||||||||||| |||||||||| | |||||||||    
T  15549648 aaatatttcgattttcaatgcattgattacacacatttttataaa 15549692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 38172666 - 38172730
Alignment:
Q  165 aattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||  |||||| || |||  ||| |||||| |||||| ||||||||||||||||||||||    
T  38172666 aattattctttaaaaatgtaaaagtttttaatttttaatgcactgattacacaaacttttataaa 38172730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 39241511 - 39241439
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||||||||||||| || || |||||  |||||||   ||||||||| ||||||| ||||| ||||||||||    
T  39241511 ttaaggattttaaaaaaataatttattttataaaaaaaataaatattttaattttcgatgcattgattacaca 39241439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 48454660 - 48454604
Alignment:
Q  173 cataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||| ||||||||||||||| |||||| || |||||| ||||| ||| |||||    
T  48454660 cataaaaaagttaaatatttcaatcttcaatacattgattatacaaaatttcataaa 48454604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 50974677 - 50974609
Alignment:
Q  147 aaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||||||| |||| || ||||||||  ||||||| || |||||||||||||||| ||||| | ||||||    
T  50974677 aaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattaca 50974609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 41370258 - 41370189
Alignment:
Q  160 taagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||||||| |  ||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  41370258 taagaaattatttctcaaaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaa 41370189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 44570179 - 44570125
Alignment:
Q  175 taaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||| ||||||| ||| ||||||||||||| |||||||||||||||| |||||    
T  44570179 taaaaatgttaaattttttaattttcaatgcattgattacacaaactttcataaa 44570125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 33982403 - 33982496
Alignment:
Q  122 aacgagtgactctcgggtattccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||||||| |||  |||||||| |||||||||| |||| || ||||||||  ||||||| |||||||||||| |||| | || || ||||||||    
T  33982403 aacgagtggctccggggtattctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattaca 33982496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 49795190 - 49795235
Alignment:
Q  190 tttcaattttcaatgcaatgattacacaaacttttataaacaaatt 235  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||    
T  49795190 tttcaattttcaatgcaccgattacacaaacttttataaaaaaatt 49795235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 23230324 - 23230272
Alignment:
Q  162 agaaattattccat-aaaaaggttaaatatttcaattttcaatgcaatgatta 213  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||    
T  23230324 agaaattattccatgaaaaaagttaaatgtttcaattttcaatgcattgatta 23230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 50343941 - 50343873
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgatta 213  Q
    ||||| ||||||||||||| ||||||||  |||||| || |||||||| ||||||||||| | ||||||    
T  50343941 ttaagcattttaaaataagtaattattctttaaaaaagtcaaatattttaattttcaatgtattgatta 50343873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 1696298 - 1696223
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||| ||||| || |||||| |||| ||||||||||||||| |  |||||||||||||| | ||||| ||||||||    
T  1696298 attctttaagtatattaaaagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattaca 1696223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 17317525 - 17317568
Alignment:
Q  184 taaatatttcaattttcaatgcaatgattacacaaacttttata 227  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||    
T  17317525 taaatattttaattttcaatgcaataaatacacaaacttttata 17317568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 36721680 - 36721617
Alignment:
Q  157 aaataagaaattattccataaaaag-gttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    ||||||||| ||||||| ||||||  || ||||||||||||| |||||||| ||||||||||||    
T  36721680 aaataagaagttattccttaaaaaaagtcaaatatttcaattctcaatgcattgattacacaaa 36721617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 52373150 - 52373075
Alignment:
Q  145 ttaaggattttaaaataagaaattattccat-aaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    ||||||||||| ||||||||||||||| ||| ||||| || |||||||  |||||||||||||   ||||||||||    
T  52373150 ttaaggattttgaaataagaaattatttcataaaaaaagtcaaatattataattttcaatgcataaattacacaaa 52373075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 53261604 - 53261643
Alignment:
Q  190 tttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  53261604 tttcaatttccaatgcagtgattacacaaacttttataaa 53261643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 41956524 - 41956462
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaa 218  Q
    ||||||||||| |||||  ||| ||  |||||||||||||||||||| ||| |||||||||||    
T  41956524 aaaataagaaagtattctttaagaaatttaaatatttcaattttcaacgcattgattacacaa 41956462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 4850631 - 4850688
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaa 202  Q
    ||||| |||||||| |||||||||||||| |||||| || ||||| || |||||||||    
T  4850631 ttaagaattttaaattaagaaattattccttaaaaaagtaaaatactttaattttcaa 4850688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 31871159 - 31871090
Alignment:
Q  146 taaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||| |||| |||| |||||||||||  ||||||| || |||||||||||||| | ||||| ||||||||    
T  31871159 taagcatttcaaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattaca 31871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 35180693 - 35180640
Alignment:
Q  162 agaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||||||||| ||| || |||| |||||||||||||| || ||||||||    
T  35180693 agaaattattccatagaaaagtcaaatgtttcaattttcaatacattgattaca 35180640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 45743316 - 45743389
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaa 218  Q
    ||||| || ||||| |||||||||||||  |||||| || |||  |||||||||||||| || |||||||||||    
T  45743316 ttaagtatgttaaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatacagtgattacacaa 45743389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 4392014 - 4392054
Alignment:
Q  189 atttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  4392014 atttcaattttcaatacactgattacacaaatttttataaa 4392054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 16556008 - 16556052
Alignment:
Q  185 aaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||| ||| |||||||||| |||||||||||| |||||||||    
T  16556008 aaatattacaaatttcaatgcattgattacacaaatttttataaa 16556052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 51736706 - 51736758
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaatt 197  Q
    ||||| ||||| |||||||||||||||  || |||| ||||||||||||||||    
T  51736706 ttaagaatttttaaataagaaattattttattaaaaagttaaatatttcaatt 51736758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 28874 - 28810
Alignment:
Q  151 attttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||| ||||||||||||||||||||  |||||||||| ||||||||||||| ||| ||||    
T  28874 attttaaaagaagaaattattccataaaaaaattaaatattttaattttcaatgcattgaataca 28810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 37352521 - 37352442
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    |||| |||||||||  |||| ||||||||||||||| |||| || |||||||||||||| ||||||| | ||||||||||    
T  37352521 attctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaa 37352442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 7596252 - 7596181
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaag-gttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||| ||||||||| ||||||||||| ||||||||| || ||| |||||||||| ||||||| ||||||||    
T  7596252 ttaagcattttaaaagaagaaattatttcataaaaagagtcaaaaatttcaatttccaatgcattgattaca 7596181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 31902843 - 31902781
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaa 218  Q
    |||||||||||||||||| ||| || || ||||||||||||||||||| || ||| |||||||    
T  31902843 aaaataagaaattattccttaagaaagtcaaatatttcaattttcaatacattgactacacaa 31902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 16878725 - 16878778
Alignment:
Q  162 agaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||||||||| |||||||| |||||||||||| ||| |||||||| ||||||||    
T  16878725 agaaattatttcataaaaaagttaaatatttcgattctcaatgcattgattaca 16878778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 18926328 - 18926401
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaa 218  Q
    ||||| ||||||||  | ||||||||||  ||||||||| ||||| |||||||||||||||| ||| |||||||    
T  18926328 ttaagcattttaaatcatgaaattattctttaaaaaggtgaaatagttcaattttcaatgcattgaatacacaa 18926401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 38452167 - 38452244
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||| |||||||||| |||| |||||||||||  ||||||| || |||||||||||||| | ||||| || |||||||    
T  38452167 attctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacaca 38452244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 33887946 - 33887887
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||||||  ||||||||  |||||| || |||||||||||||||||||||| ||||||||    
T  33887946 aaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattaca 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 5248091 - 5248177
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttat 226  Q
    |||| |||||||||| |||| |||||||||||  ||||||| || ||||||||| ||| |  ||||| |||||||||| | ||||||    
T  5248091 attctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttat 5248177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 8237961 - 8238035
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| |||| ||||||||  |||||| || |||  ||||| ||||||||||| |||||||||||||||| |||||    
T  8237961 taaattaagtaattattctttaaaaatgtcaaagttttcatttttcaatgcactgattacacaaactttcataaa 8238035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 34398150 - 34398096
Alignment:
Q  175 taaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||| ||||| |||||||||||||||| |||  ||||||| |||||||||    
T  34398150 taaaaaggtcaaatacttcaattttcaatgcattgaaaacacaaatttttataaa 34398096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 37129906 - 37129864
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattt 198  Q
    |||||||||||||||||  |||||| |||||||||||||||||    
T  37129906 aaaataagaaattattctttaaaaaagttaaatatttcaattt 37129864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 40722372 - 40722434
Alignment:
Q  157 aaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    ||||||||| ||||||  ||| || || |||||||||||||||||||||| | ||||||||||    
T  40722372 aaataagaatttattctttaagaaagtcaaatatttcaattttcaatgcattaattacacaaa 40722434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 45033864 - 45033814
Alignment:
Q  55 cacttatcttatagtggagagtgattaaaaagtcttggtagacatgattac 105  Q
    |||||||||||||||||||||||| | |||  ||||||| |||||||||||    
T  45033864 cacttatcttatagtggagagtgactcaaatatcttggtcgacatgattac 45033814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 676467 - 676395
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataa 228  Q
    ||||||||| |||||||   ||||||| ||||||||||| ||||| |||||| |||||||||| | ||||||||    
T  676467 taaaataagtaattatttattaaaaag-ttaaatatttcgattttaaatgcattgattacacatatttttataa 676395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 8920791 - 8920738
Alignment:
Q  162 agaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||||||||| ||| || |||| ||||||||| ||||||| ||||||||    
T  8920791 agaaattattccatagaaaagtcaaatgtttcaatttccaatgcattgattaca 8920738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 15995921 - 15995962
Alignment:
Q  176 aaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    ||||| |||||||||||| |||||||||||| ||||||||||    
T  15995921 aaaaaagttaaatatttcgattttcaatgcattgattacaca 15995962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 24299236 - 24299163
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaa 218  Q
    ||||| || ||||| |||||||||||||| |||||| || |||| ||| ||||| ||||||| |||||| ||||    
T  24299236 ttaagcatgttaaattaagaaattattccttaaaaatgtcaaattttttaatttccaatgcactgattatacaa 24299163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 36015115 - 36015039
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacac 216  Q
    |||| |||||||||| |||| |||||||||||  |||||||  | |||||| ||||||||||||  | |||||||||    
T  36015115 attctttaaggatttcaaaaaaagaaattattttataaaaaaatcaaatatgtcaattttcaatttattgattacac 36015039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 37359461 - 37359546
Alignment:
Q  139 tattccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgca-atgattacacaaacttt 223  Q
    |||| |||||| |||||||| |||| |||||||||||||||| ||||||  |||||||||||||| ||  | ||||||||||||||    
T  37359461 tatttcttaagcattttaaattaagtaattattccataaaaatgttaaagttttcaattttcaattcactttattacacaaacttt 37359546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 37744993 - 37745061
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaactttt 224  Q
    |||| ||||| ||||||||||||||  ||||||||| ||||||| |||||| |||||||||||| ||||    
T  37744993 aaaagaagaatttattccataaaaaaattaaatattacaatttttaatgcattgattacacaaattttt 37745061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 53433285 - 53433221
Alignment:
Q  151 attttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||| |||||||||||| ||||||| || |||||||| ||||||| ||||| ||||||||    
T  53433285 attttaaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattaca 53433221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 37388417 - 37388492
Alignment:
Q  154 ttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||| |||| ||||||||  |||||| || |||| ||||| ||||||||||| |||||||||||| |||||||||    
T  37388417 ttaaattaagtaattattctttaaaaatgtgaaatttttcagttttcaatgcattgattacacaaatttttataaa 37388492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 37708438 - 37708508
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||| || |||||||||| ||||| ||  |||||| |||||| |||||||||||||||||| ||||||||    
T  37708438 ttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatgcactgattaca 37708508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 45757930 - 45758019
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaacaaat 234  Q
    ||||| || ||||| |||| ||||||||  |||||| || |||  ||||||||| ||||||| |||||||||||||||| ||||| ||||    
T  45757930 ttaagcatgttaaattaagcaattattctttaaaaatgtcaaagttttcaatttacaatgcactgattacacaaactttcataaaaaaat 45758019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 30464051 - 30463992
Alignment:
Q  156 aaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||| |||||||||||| ||||||| || ||| ||||||||||| |||||| ||||||||    
T  30464051 aaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattaca 30463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 31419226 - 31419278
Alignment:
Q  161 aagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||||||||||||||  |||||||||| ||||||||||| | ||||||||    
T  31419226 aagaaattattccataaaaa--ttaaatatttaaattttcaatgtattgattaca 31419278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 43749579 - 43749505
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaa 219  Q
    ||||||||| ||||| || ||||||||| || |||| || |||||||||||||||| ||  | ||||||||||||    
T  43749579 ttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattacacaaa 43749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 48551051 - 48551125
Alignment:
Q  155 taaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| |||||||||||||  |||||| || |||  |||||||||||||||||  ||||||||||  |||||||||    
T  48551051 taaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatgcaccgattacacaattttttataaa 48551125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 51039762 - 51039840
Alignment:
Q  151 attttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||||||| ||| ||||||||| ||||||| || ||||| |||||||||||||| | ||| |||| ||| ||| |||||    
T  51039762 attttaaattaaaaaattattctataaaaaagtcaaatagttcaattttcaatgaattgaatacataaattttcataaa 51039840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 4824718 - 4824657
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgca 206  Q
    ||||||||| |||| ||||||||||||   ||||||  ||||||| ||||||||||||||||    
T  4824718 ttaaggattctaaattaagaaattattaactaaaaaatttaaatacttcaattttcaatgca 4824657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 19898212 - 19898135
Alignment:
Q  140 attccttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||| |||||| |||||| | || ||||||||  ||| |||  | |||||||||||||||||||||| ||||||||||    
T  19898212 attctttaaggtttttaagacaataaattattttatataaaaatcaaatatttcaattttcaatgcattgattacaca 19898135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 1511346 - 1511406
Alignment:
Q  156 aaaataagaaattattccat-aaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    |||| ||||||||||||||| ||||| || ||| |||||||||| ||||||| ||||||||    
T  1511346 aaaagaagaaattattccatcaaaaatgtcaaagatttcaatttccaatgcattgattaca 1511406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 25299126 - 25299058
Alignment:
Q  161 aagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||||||  ||||||   |||| |||||||||||||||||||| | | |||||||||| |||||    
T  25299126 aagaaattattctttaaaaaaagtaaagatttcaattttcaatgcaataaatgcacaaactttcataaa 25299058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 53040470 - 53040554
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||||||| |||| ||||||||||||   ||||||  | ||||| |||||||| ||||| | ||| |||||||||||| |||||    
T  53040470 ttaaggattctaaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattgaatacacaaactttcataaa 53040554  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 7465478 - 7465548
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||||||| | ||| |||||||| ||||||||||| || |||||||||||||| | ||||| ||||||||    
T  7465478 ttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattaca 7465548  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 12307826 - 12307898
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacaca 217  Q
    |||||||||| |||| |||||||||||  ||||||| || |||||||| |||||||||| || | ||||||||    
T  12307826 ttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattacaca 12307898  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 31702845 - 31702761
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    ||||| |||| |||| |||||||||||  ||||||| ||||| ||||| |||||  |||||| |||||||||| | |||||||||    
T  31702845 ttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgattacacatatttttataaa 31702761  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 3769378 - 3769338
Alignment:
Q  190 tttcaattttcaatgcaa-tgattacacaaacttttataaa 229  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  3769378 tttcaattttcaattcaaatgattacacaaacttttataaa 3769338  T

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Target: scaffold0427 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 2401 - 2458
Alignment:
Q  158 aataagaaattattccataaaaaggttaaatatttcaattttcaatgcaatgattaca 215  Q
    ||||| ||||||||||||||||| || ||||||| |||||  ||||||| ||||||||    
T  2401 aataataaattattccataaaaaagtcaaatattacaattaacaatgcattgattaca 2458  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 26747 - 26780
Alignment:
Q  190 tttcaattttcaatgcaatgattacacaaacttt 223  Q
    ||||||||||||||||| ||||||||||||||||    
T  26747 tttcaattttcaatgcactgattacacaaacttt 26780  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 189070 - 189123
Alignment:
Q  145 ttaaggattttaaaataagaaattattccataaaaaggttaaatatttcaattt 198  Q
    ||||| ||||||||||||| ||||||||  |||||| |||||||||||| ||||    
T  189070 ttaagcattttaaaataagcaattattctttaaaaaagttaaatatttctattt 189123  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 4969 - 5021
Alignment:
Q  177 aaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| |||||| |||| |||||||||| |||||| |||||| |||||||||||    
T  4969 aaaaagttaaacattttaattttcaatacaatgaatacacatacttttataaa 5021  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 35295 - 35347
Alignment:
Q  177 aaaaggttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 229  Q
    |||| ||||||  |||||||||||| ||||||||||||| ||||||| |||||    
T  35295 aaaatgttaaacttttcaattttcagtgcaatgattacataaactttcataaa 35347  T

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