View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_42 (Length: 232)
Name: NF9377_low_42
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2223362 - 2223146
Alignment:
| Q |
1 |
cccaccaccaccacagccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccattttcataaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2223362 |
cccaccaccaccacagccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccatcttcataaaac |
2223263 |
T |
|
| Q |
101 |
aagaacacatagcttcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcagcctatcacggcaagcattcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2223262 |
aagaacacatagcttcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcaacctatcacggcaagcattcgc |
2223163 |
T |
|
| Q |
201 |
caccgtcataccaccat |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2223162 |
caccgtcataccaccat |
2223146 |
T |
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