View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_46 (Length: 226)
Name: NF9377_low_46
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_46 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1192917 - 1192692
Alignment:
| Q |
1 |
aagagcttttggaaagtttgcatggattcttgtgttgatgcttcacccatggttgtgtctaaaggttcagatctgtatttattcattggatctcactcac |
100 |
Q |
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| T |
1192917 |
aagagcttttggaaagtttacatggaattttgtgttgatgcttcacccatggttgtgtctaaaggttcagatctgtatttattcattggatctcactcac |
1192818 |
T |
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| Q |
101 |
aaatttctctgcataaatgctagaaggtataaacaaaatatagnnnnnnnnnnggtataaatggttttaattcatcgcatagtgcttctaatgttattga |
200 |
Q |
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| T |
1192817 |
aaatttctctgcataaatgctagaaggtataaacaaaatatagttttttttttggtataaatggttttaattcatcgcatagtgcttctaatgttattga |
1192718 |
T |
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| Q |
201 |
tcttaaatcaataaatgtttgtattt |
226 |
Q |
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| T |
1192717 |
tcttaaatcaataaatgtttgtattt |
1192692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 12994133 - 12993919
Alignment:
| Q |
1 |
aagagcttttggaaagtttgcatggattcttgtgttgatgcttcacccatggttgtgtctaaaggttcagatctgtatttattcattggatctcact--c |
98 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||||||| | |
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| T |
12994133 |
aagagcttttggaaagtttacatggaatcttgtgttgatgcttcacccatggttgtctcaaaaggatcagatttgtatttattcattggatctcactcac |
12994034 |
T |
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| Q |
99 |
acaaatttctctgcataaatgctagaaggtataaacaaaatatagnnnnnnnnnnggtataaatggttttaattcatcgcatagtgcttctaatgttatt |
198 |
Q |
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| T |
12994033 |
acaaatttctctgcataaatgttagaaggtataaacaaaatatagtta--------gtataaatggtttt-----atcgcatagtgcttctcatgttatt |
12993947 |
T |
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| Q |
199 |
gatcttaaatcaataaatgtttgtattt |
226 |
Q |
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| T |
12993946 |
gatcttaaaccaataaatgtttatattt |
12993919 |
T |
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