View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9377_low_47 (Length: 225)

Name: NF9377_low_47
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9377_low_47
NF9377_low_47
[»] scaffold1333 (2 HSPs)
scaffold1333 (87-211)||(835-962)
scaffold1333 (12-82)||(1011-1081)
[»] chr8 (1 HSPs)
chr8 (154-195)||(6225107-6225148)
[»] chr4 (1 HSPs)
chr4 (154-195)||(1512621-1512662)
[»] chr6 (1 HSPs)
chr6 (154-194)||(31213260-31213300)
[»] chr7 (1 HSPs)
chr7 (95-140)||(6073969-6074014)
[»] chr5 (1 HSPs)
chr5 (154-194)||(16792775-16792815)


Alignment Details
Target: scaffold1333 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold1333
Description:

Target: scaffold1333; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 962 - 835
Alignment:
Q  87 atgacttatgatttcctatcaatctctgcactcaatctgctaatttcagcaagtatgac---ataacatcacaagaaattatagattttgctaccattat 183  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |   ||||||  |||||||| ||| |||||||| ||||||||    
T  962 atgacttatgatttcctatcaatctctgaactcagtctgctaatttaagcaagtatggcataataacactacaagaaaatattgattttgccaccattat 863  T
Q  184 tttactacaaatgattgtttttatttct 211  Q
    |||||||||||| ||| |||||||||||    
T  862 tttactacaaataattctttttatttct 835  T

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Target: scaffold1333; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 1081 - 1011
Alignment:
Q  12 agcacagaaacactaattgcaactagaaaattaatatgaatcaaaattaattagccacaataaagggagta 82  Q
    |||||| ||| ||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| |||||||    
T  1081 agcacaaaaatactaattgcaactaggaaatcaatatgaattaaaattaattagccataataatgggagta 1011  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 6225107 - 6225148
Alignment:
Q  154 acaagaaattatagattttgctaccattattttactacaaat 195  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  6225107 acaagaaaatatagattttgctaccattattttactacaaat 6225148  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 1512662 - 1512621
Alignment:
Q  154 acaagaaattatagattttgctaccattattttactacaaat 195  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  1512662 acaagaaaatatagattttactaccattattttactacaaat 1512621  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 31213300 - 31213260
Alignment:
Q  154 acaagaaattatagattttgctaccattattttactacaaa 194  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  31213300 acaagaaaatatagattttgctgccattattttactacaaa 31213260  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 6074014 - 6073969
Alignment:
Q  95 tgatttcctatcaatctctgcactcaatctgctaatttcagcaagt 140  Q
    |||||||||||||||||||| ||||  |||||| ||||||||||||    
T  6074014 tgatttcctatcaatctctgaactctttctgctgatttcagcaagt 6073969  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 16792775 - 16792815
Alignment:
Q  154 acaagaaattatagattttgctaccattattttactacaaa 194  Q
    |||||||| ||| ||||||||||||||||| ||||||||||    
T  16792775 acaagaaaatattgattttgctaccattatattactacaaa 16792815  T

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