View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_49 (Length: 220)
Name: NF9377_low_49
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 7874717 - 7874513
Alignment:
| Q |
16 |
gtgctgaaccatgtaaccgtagagatccaaacgggtcagttgcgggtctgacccgttttagaaaaataaaactgttagtcgcgtgtacacgcgcaaaaga |
115 |
Q |
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| T |
7874717 |
gtgctgaaccatgtaaccgtagagatccaaacgggtcagttgcgggtctgacccgttttagaaaaataaaactgttagtcgcgtgtacacgcgcaaaaga |
7874618 |
T |
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| Q |
116 |
acccggacgtgtgaaaccgtccagcgagtgggttacacgcacgcatacatatgcacgtgtccctgttttacccttcacacacaatacgtgcaatccctat |
215 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7874617 |
acccggacgtgtgtaaccgtccagcgagtgtgttacacgcacgcatacatatgcacgtgtccctgttttacccttcacacacaatacgtgcaatccctat |
7874518 |
T |
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| Q |
216 |
aacgc |
220 |
Q |
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||||| |
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| T |
7874517 |
aacgc |
7874513 |
T |
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