View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_53 (Length: 208)
Name: NF9377_low_53
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 3032367 - 3032187
Alignment:
| Q |
19 |
taaatttggttggttcaatcagttgaagtgatcgaatcaagtgaaccatgattggtctcacagtttcgatctccggtccagtcttgcttttacatatttc |
118 |
Q |
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| T |
3032367 |
taaatttggttggttcaatcagttgaagtgatcgaatcaagtgaaccatgattggtctcacagtttcgatctccggtccagtcttgcttttacatatttc |
3032268 |
T |
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| Q |
119 |
acctatatagcaattcaaaatctgcaaagaaacaattggaaagatctctgtgttctgattgaaatattttaattctctgct |
199 |
Q |
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| T |
3032267 |
acctatatagcaattcaaaatctgcaaagaaacaattggaaagatctctgtgttctgattgaaatattttaattctctgct |
3032187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 20061536 - 20061629
Alignment:
| Q |
104 |
gcttttacatatttcacctatatagcaattcaaaatc-tgcaaagaaacaattggaaagatctctgtgttctgattgaaatattttaattctct |
196 |
Q |
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| T |
20061536 |
gcttatacatatttcacctatatagcaattcaaaatcatgcaaaaaaataattgaaaagcactctttgttttgattaacatattttaattctct |
20061629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 20061384 - 20061428
Alignment:
| Q |
27 |
gttggttcaatcagttgaagtgatcgaatcaagtgaaccatgatt |
71 |
Q |
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| T |
20061384 |
gttggttcaatcagttgaaacgattgaatcaattgaaccatgatt |
20061428 |
T |
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