View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_7 (Length: 402)
Name: NF9377_low_7
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 5694068 - 5693693
Alignment:
| Q |
14 |
aggggcaggatttgacaaactatgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgcacctttagca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5694068 |
aggggcaggatttgacaaactatgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgcacccttagca |
5693969 |
T |
|
| Q |
114 |
atcacatcatcttcatatttcaatggaccataatgtcctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctttaagcatat |
213 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5693968 |
atcacatcatcttcatatttcaatggaccataatgccctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctttaagcatat |
5693869 |
T |
|
| Q |
214 |
caatgtttgcgcaagtgtttccttcattttttggttttcctttgattggccaacatgctttgtatatggcaaggcgagctaagggggctccaccagaagc |
313 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
5693868 |
caatgtttgcgcaagtgtttccttcgttttttggttttcctttgattggccaacatgctttgtatatggcaaggcgggctaagggggctccgccagaggc |
5693769 |
T |
|
| Q |
314 |
tgtaccgctggcgaagcctccgattgctgcagcatttttaatggttcgccctgccactattgaagatgtgtgtgtt |
389 |
Q |
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| T |
5693768 |
tgtaccgctggcgaagcctccgattgctgcagcatttttaatggttcgccctgccactattgaagatgtgtgtgtt |
5693693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 5684192 - 5683817
Alignment:
| Q |
14 |
aggggcaggatttgacaaactatgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgcacctttagca |
113 |
Q |
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||||| |||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
5684192 |
aggggaaggatttgacaaactatgaggagaagggccagcatttccagcactacaaacaacaacaatgtttttccttacagcttgtaatgcacccttagca |
5684093 |
T |
|
| Q |
114 |
atcacatcatcttcatatttcaatggaccataatgtcctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctttaagcatat |
213 |
Q |
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||||||||||| |||||||||||||| || | || ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684092 |
atcacatcatcctcatatttcaatggcgcaggaaacccaatggaaaggtttataacatcaacaccatcttcaattgcatcatctatagctttaagcatat |
5683993 |
T |
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| Q |
214 |
caatgtttgcgcaagtgtttccttcattttttggttttcctttgattggccaacatgctttgtatatggcaaggcgagctaagggggctccaccagaagc |
313 |
Q |
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||||||| | |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |
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| T |
5683992 |
caatgttagtgcaaacatttccatcattttttggttttccttttattggccaacatgctttgtatattgcaaggcgagctaatggggctccaccagaggc |
5683893 |
T |
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| Q |
314 |
tgtaccgctggcgaagcctccgattgctgcagcatttttaatggttcgccctgccactattgaagatgtgtgtgtt |
389 |
Q |
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||| || || ||||||||||||| ||||| ||||||| || | ||||||||| |||||||||| ||||||||| |
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| T |
5683892 |
tgtgcctctagcgaagcctccgagtgctgatgcattttgaactgctcgccctgctactattgaagccgtgtgtgtt |
5683817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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