View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_8 (Length: 396)
Name: NF9377_low_8
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 38561477 - 38561108
Alignment:
| Q |
19 |
gacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttagaattgtggtgagaaggttatgataaggtga |
118 |
Q |
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| T |
38561477 |
gacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttagaattgtagtgagaaggttatgataaggtga |
38561378 |
T |
|
| Q |
119 |
aatgtttatttatttatataaatgcttgtaacatatgacatgatatttagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtg |
218 |
Q |
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| T |
38561377 |
aatgtttatttatttatataaatgcttgtaacatatgatatgatatttagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtg |
38561278 |
T |
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| Q |
219 |
tgatacgtatagcatttataaagtaagagtttgagagtgaagtcaaaatgaacatgtcattatgtcaccttcacatcacccattttgcatatatacatga |
318 |
Q |
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| T |
38561277 |
tgatacatatagcatttataaagtaagagtttgagagtgaagtcaacatgaacatgtcactatgtcaccttcacagcacccattttgcatatatacatga |
38561178 |
T |
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| Q |
319 |
aaatcttgaattcacgtacacacttgccttctctctattgtgttgcgtgagtggatatttgttctctgct |
388 |
Q |
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| T |
38561177 |
aaatcttgaattcacgtacacacttgccttctctctattgtgttgcgtgagtggatatttgttctttgct |
38561108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 38580693 - 38580560
Alignment:
| Q |
19 |
gacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttagaattgtggtgagaaggttatgataaggtga |
118 |
Q |
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| T |
38580693 |
gacctccttgttgattatgatccattgaatttttgttacaacaaataacctaaagttgattgggatttagaattgtggtgagcaggttatgataaggtga |
38580594 |
T |
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| Q |
119 |
aatgtttatttatttatataaatgcttgtaacat |
152 |
Q |
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| T |
38580593 |
aatgtttatttatttatacaagtgcttgtaacat |
38580560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 38605898 - 38605829
Alignment:
| Q |
19 |
gacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttag |
88 |
Q |
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| T |
38605898 |
gacctccttgttgattttgatccattgaatttttgttacaacaaataacctaaagttgattgggttttag |
38605829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 38605820 - 38605716
Alignment:
| Q |
166 |
tagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtgtgatacgtatagcatttataaagtaagagtttgagagtgaagtcaaa |
265 |
Q |
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||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| || |||||| |||| | ||||| |
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| T |
38605820 |
tagtaaatagttggttcattcacaaatattccataagagtgatgaggtgtgtgtgatacgtatagcccttataaaggaaaagtttgggagtaaggtcaac |
38605721 |
T |
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| Q |
266 |
atgaa |
270 |
Q |
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||||| |
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| T |
38605720 |
atgaa |
38605716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 381
Target Start/End: Complemental strand, 38580393 - 38580307
Alignment:
| Q |
295 |
cacccattttgcatatata-catgaaaatcttgaattcacgtacacacttgccttctctctattgtgttgcgtgagtggatatttgtt |
381 |
Q |
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| T |
38580393 |
caccctttttgcatatattgcatgaaaattttga-ttctcgtacacacttgccttctctctgttgtgtcgggtaagtggatatttgtt |
38580307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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