View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9378_low_2 (Length: 380)
Name: NF9378_low_2
Description: NF9378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9378_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 34223159 - 34222801
Alignment:
| Q |
18 |
gagaagagacagaagctgcttggagctttgcagagatgcgacgaggatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggttt |
117 |
Q |
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| T |
34223159 |
gagaagagacagaagctgcttggagctttgcagagatgcgacgaggatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggttt |
34223060 |
T |
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| Q |
118 |
cgtcaccttcgccggcggtggttaaacgaacggttggtgaggtgaaatgttcagtggttaacggtgaacaacaacaaccgagtcctgtttctgttcttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
34223059 |
cgtcaccttcgccggcggtggttaaacgaacggttggtgaggtgaaatgttcggtggttaacggtgaacaacagcaaccgagtcctgtttctgtacttga |
34222960 |
T |
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| Q |
218 |
tgagttcactcgttcgccactcagtccaaattgtcacttcggacgccattcacattgtaagtcttcaatcttcataatctc-nnnnnnngcttactaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
34222959 |
cgagttcactcgttcgccactcagtccaaattgtcacttcggacgccattcacattgtaagtctttaatcttcataatctctttttttttcttactaatt |
34222860 |
T |
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| Q |
317 |
agttttaatcgttaatttaatttcaattcgcgatcattctaagtgtaataacaccatac |
375 |
Q |
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| T |
34222859 |
agttttaaacgttaatttgatttcaattcgcgatcattctaattgtaataacactatac |
34222801 |
T |
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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 55782414 - 55782325
Alignment:
| Q |
63 |
gatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggtttcgtcaccttcgccggcggtggttaaacgaacggtt |
152 |
Q |
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| T |
55782414 |
gatctcaaggtgctgaagtaaatcattgaatcagtgaggactcctgaaccagtttcgtcaccttcgccggcggtagttaaacgaacggtt |
55782325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 55846594 - 55846505
Alignment:
| Q |
63 |
gatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggtttcgtcaccttcgccggcggtggttaaacgaacggtt |
152 |
Q |
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| T |
55846594 |
gatctcaaggtgctgaagtaaatcattgaatcagtgaggactcctgaaccagtttcgtcaccttcgccggcggtagttaaacgaacggtt |
55846505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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