View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9378_low_5 (Length: 244)

Name: NF9378_low_5
Description: NF9378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9378_low_5
NF9378_low_5
[»] chr3 (34 HSPs)
chr3 (75-235)||(42771081-42771241)
chr3 (3-55)||(1417695-1417747)
chr3 (1-55)||(30709995-30710049)
chr3 (2-55)||(3323768-3323821)
chr3 (3-55)||(6794918-6794970)
chr3 (1-55)||(36028934-36028988)
chr3 (2-55)||(26298811-26298864)
chr3 (2-55)||(47924074-47924127)
chr3 (1-55)||(1417095-1417149)
chr3 (1-55)||(27026774-27026828)
chr3 (3-55)||(3716208-3716261)
chr3 (7-55)||(18554497-18554545)
chr3 (3-55)||(24695369-24695421)
chr3 (1-52)||(35925314-35925365)
chr3 (1-55)||(8370691-8370745)
chr3 (1-55)||(16264178-16264232)
chr3 (1-55)||(27038119-27038173)
chr3 (1-55)||(39040195-39040249)
chr3 (2-55)||(40592988-40593044)
chr3 (2-55)||(37466120-37466173)
chr3 (3-55)||(47649569-47649622)
chr3 (3-55)||(48438043-48438095)
chr3 (3-54)||(8126531-8126582)
chr3 (8-54)||(21711055-21711102)
chr3 (20-62)||(7167063-7167105)
chr3 (1-60)||(27975153-27975214)
chr3 (3-40)||(4387239-4387276)
chr3 (3-47)||(40844489-40844533)
chr3 (107-163)||(42771682-42771737)
chr3 (4-53)||(8477193-8477242)
chr3 (1-53)||(1309687-1309739)
chr3 (1-53)||(32143154-32143206)
chr3 (1-53)||(33386870-33386922)
chr3 (1-40)||(27452802-27452842)
[»] scaffold0087 (2 HSPs)
scaffold0087 (1-76)||(44173-44248)
scaffold0087 (1-55)||(37046-37100)
[»] chr7 (25 HSPs)
chr7 (1-75)||(2479148-2479222)
chr7 (1-75)||(47263489-47263563)
chr7 (3-55)||(35960643-35960695)
chr7 (3-55)||(4796886-4796938)
chr7 (3-55)||(46516527-46516579)
chr7 (3-55)||(49091491-49091543)
chr7 (1-55)||(9190221-9190276)
chr7 (1-60)||(44848899-44848958)
chr7 (1-55)||(21988735-21988789)
chr7 (2-55)||(9235772-9235825)
chr7 (1-55)||(9185376-9185431)
chr7 (1-55)||(55768-55822)
chr7 (1-55)||(21983111-21983165)
chr7 (2-55)||(23403228-23403281)
chr7 (3-55)||(29159631-29159684)
chr7 (3-55)||(33332666-33332718)
chr7 (2-40)||(28617443-28617481)
chr7 (2-55)||(3047081-3047133)
chr7 (2-55)||(20283918-20283971)
chr7 (1-55)||(2580217-2580271)
chr7 (3-42)||(2647913-2647952)
chr7 (20-62)||(2057777-2057819)
chr7 (22-55)||(2647962-2647995)
chr7 (1-53)||(18408597-18408649)
chr7 (2-53)||(1533658-1533709)
[»] chr6 (17 HSPs)
chr6 (1-76)||(5757690-5757765)
chr6 (1-57)||(21355865-21355921)
chr6 (2-55)||(31086677-31086730)
chr6 (3-55)||(5572812-5572864)
chr6 (1-55)||(31936416-31936471)
chr6 (2-55)||(5017687-5017740)
chr6 (3-55)||(18232674-18232726)
chr6 (3-55)||(31979342-31979394)
chr6 (3-55)||(21801566-21801616)
chr6 (3-55)||(10077381-10077433)
chr6 (3-55)||(4629790-4629843)
chr6 (2-39)||(27165547-27165584)
chr6 (3-51)||(24436182-24436230)
chr6 (4-53)||(5674987-5675036)
chr6 (20-62)||(30126031-30126072)
chr6 (3-55)||(22963529-22963580)
chr6 (3-55)||(23824813-23824864)
[»] chr1 (26 HSPs)
chr1 (1-60)||(37069592-37069651)
chr1 (1-55)||(21536783-21536837)
chr1 (2-55)||(29651639-29651692)
chr1 (3-54)||(47099039-47099090)
chr1 (1-55)||(26645111-26645165)
chr1 (2-55)||(16124732-16124785)
chr1 (3-55)||(27104584-27104637)
chr1 (3-52)||(40816949-40816998)
chr1 (3-55)||(775501-775553)
chr1 (3-55)||(13598225-13598277)
chr1 (2-55)||(9024045-9024098)
chr1 (3-55)||(47704153-47704206)
chr1 (2-55)||(50521318-50521371)
chr1 (3-55)||(19072755-19072807)
chr1 (3-55)||(19120645-19120697)
chr1 (1-55)||(3281539-3281591)
chr1 (2-52)||(17345734-17345782)
chr1 (3-54)||(47103056-47103107)
chr1 (15-55)||(8870547-8870587)
chr1 (19-55)||(9476091-9476127)
chr1 (1-55)||(13604837-13604891)
chr1 (2-41)||(22819268-22819307)
chr1 (1-53)||(19359059-19359111)
chr1 (1-53)||(19361649-19361701)
chr1 (1-53)||(19380289-19380341)
chr1 (1-53)||(24202981-24203033)
[»] chr2 (29 HSPs)
chr2 (1-75)||(28259391-28259465)
chr2 (1-55)||(23078686-23078740)
chr2 (1-55)||(36757975-36758029)
chr2 (1-55)||(42039883-42039937)
chr2 (2-55)||(16940424-16940477)
chr2 (2-55)||(17011089-17011142)
chr2 (2-55)||(10445660-10445714)
chr2 (1-55)||(13569157-13569211)
chr2 (2-55)||(8390368-8390421)
chr2 (2-55)||(20522049-20522102)
chr2 (3-55)||(21629780-21629831)
chr2 (2-50)||(33528836-33528884)
chr2 (1-55)||(10707467-10707521)
chr2 (3-55)||(8039888-8039941)
chr2 (2-55)||(17865032-17865085)
chr2 (2-55)||(40014757-40014810)
chr2 (3-55)||(34388688-34388740)
chr2 (2-62)||(11099144-11099205)
chr2 (3-39)||(31055887-31055923)
chr2 (3-46)||(33117974-33118017)
chr2 (3-52)||(34682550-34682600)
chr2 (3-52)||(14699214-14699263)
chr2 (18-55)||(32178423-32178460)
chr2 (1-62)||(25398317-25398378)
chr2 (1-62)||(25403455-25403516)
chr2 (2-40)||(27149081-27149119)
chr2 (1-53)||(3491584-3491636)
chr2 (6-53)||(9296623-9296670)
chr2 (19-55)||(39482764-39482800)
[»] chr8 (21 HSPs)
chr8 (1-60)||(7412161-7412220)
chr8 (3-55)||(19175973-19176025)
chr8 (1-55)||(4455857-4455911)
chr8 (2-55)||(5702698-5702751)
chr8 (3-55)||(9766036-9766088)
chr8 (3-55)||(6127047-6127100)
chr8 (3-55)||(4696819-4696871)
chr8 (3-55)||(19752609-19752663)
chr8 (3-52)||(26403446-26403496)
chr8 (2-62)||(36979196-36979257)
chr8 (20-62)||(10689379-10689421)
chr8 (2-55)||(6813507-6813559)
chr8 (3-55)||(23799794-23799845)
chr8 (2-41)||(5990774-5990813)
chr8 (1-55)||(7493282-7493334)
chr8 (2-62)||(4760293-4760354)
chr8 (1-53)||(26287734-26287786)
chr8 (1-53)||(26312985-26313037)
chr8 (2-62)||(30655460-30655520)
chr8 (1-53)||(31071442-31071494)
chr8 (19-55)||(28307386-28307421)
[»] chr5 (15 HSPs)
chr5 (1-76)||(9353544-9353620)
chr5 (1-55)||(14520058-14520112)
chr5 (3-55)||(19588575-19588627)
chr5 (1-55)||(11917189-11917243)
chr5 (5-55)||(42126625-42126675)
chr5 (2-55)||(28832089-28832142)
chr5 (3-55)||(11182050-11182102)
chr5 (3-55)||(3880131-3880184)
chr5 (3-55)||(17004175-17004228)
chr5 (2-55)||(42127624-42127677)
chr5 (18-55)||(10281691-10281728)
chr5 (1-53)||(15464364-15464416)
chr5 (1-62)||(38191995-38192056)
chr5 (1-62)||(38219220-38219281)
chr5 (1-53)||(36932563-36932615)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-55)||(85514-85568)
[»] chr4 (24 HSPs)
chr4 (3-55)||(25862238-25862290)
chr4 (3-55)||(54867011-54867063)
chr4 (1-55)||(5147506-5147560)
chr4 (1-55)||(16624223-16624277)
chr4 (1-55)||(16630894-16630948)
chr4 (2-55)||(10047208-10047261)
chr4 (1-55)||(5143088-5143142)
chr4 (1-55)||(38152654-38152708)
chr4 (1-42)||(5396888-5396929)
chr4 (6-55)||(8689697-8689746)
chr4 (3-55)||(24333639-24333692)
chr4 (3-55)||(3796737-3796790)
chr4 (2-55)||(5112070-5112122)
chr4 (2-39)||(5269409-5269446)
chr4 (2-55)||(34496038-34496090)
chr4 (3-62)||(29760461-29760521)
chr4 (3-55)||(39245822-39245874)
chr4 (3-55)||(42599793-42599845)
chr4 (2-55)||(1983514-1983566)
chr4 (3-47)||(6743636-6743680)
chr4 (2-62)||(24741760-24741820)
chr4 (1-53)||(28468740-28468792)
chr4 (2-39)||(36315427-36315464)
chr4 (2-39)||(36329636-36329673)
[»] scaffold1805 (1 HSPs)
scaffold1805 (1-55)||(1236-1291)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-75)||(45065-45138)
[»] scaffold0184 (1 HSPs)
scaffold0184 (2-55)||(29705-29758)
[»] scaffold0078 (2 HSPs)
scaffold0078 (2-55)||(43086-43139)
scaffold0078 (2-55)||(23359-23412)
[»] scaffold0006 (3 HSPs)
scaffold0006 (3-55)||(5510-5562)
scaffold0006 (3-55)||(2321-2373)
scaffold0006 (1-55)||(133494-133548)
[»] scaffold0176 (1 HSPs)
scaffold0176 (3-55)||(17095-17147)
[»] scaffold0148 (1 HSPs)
scaffold0148 (6-55)||(10556-10606)
[»] scaffold0188 (2 HSPs)
scaffold0188 (1-53)||(24258-24310)
scaffold0188 (1-40)||(18165-18205)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-37)||(8633-8670)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 42771081 - 42771241
Alignment:
Q  75 atgtaataataataaaactgattnnnnnnnntaatggtgaattggataaacaaataaatgttagagatgcacactagatcaataacgaatggaggtacat 174  Q
    |||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  42771081 atgtaataataataaaactgattaaaaaaaataatggtgaattgaataaacaaataaatgttagagatacacactagatcaataatgaatggaggtacat 42771180  T
Q  175 tataattttcgagaagtacacacccgaacaagcaatataacaaagaaagaatactaacacc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42771181 tataattttcgagaagtacacaccagaacaagcaatataacaaagaaagaatactaacacc 42771241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 1417695 - 1417747
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1417695 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 1417747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30709995 - 30710049
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30709995 acattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 30710049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 3323768 - 3323821
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3323768 cattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 3323821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 6794918 - 6794970
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6794918 attgattaccacttcctttgctccacacatcgttgtttttcattggtgtgatt 6794970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36028988 - 36028934
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  36028988 acattgattaccacttcatttgctccacacatctttgttattcattggtgtgatt 36028934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 26298864 - 26298811
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  26298864 cattgattaccacttcctttgatccacacatctttgttattcattggtgtgatt 26298811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 47924074 - 47924127
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  47924074 cattgattaccacttcctttactccacacatctttgttattcattggtgtgatt 47924127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1417149 - 1417095
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  1417149 acattgattaccacttcctttactccacacatctttattattcattggtgtgatt 1417095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27026828 - 27026774
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  27026828 acattgattaccatttcatttgctccacacatctttgttattcattggtgtgatt 27026774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 3716208 - 3716261
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  3716208 attgattaccacttccttttgctccacacatctttgttattcattggtgtgatt 3716261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 18554497 - 18554545
Alignment:
Q  7 attaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  18554497 attaccactttctttgctccacacatctttgttattcattggtgtgatt 18554545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 24695369 - 24695421
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||||    
T  24695369 attgattaccacttcctttgctccacacatctttattattcatttgtgtgatt 24695421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35925365 - 35925314
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtg 52  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||||||    
T  35925365 acattgattaccacctgctttgctccacatatctttgtttttcattggtgtg 35925314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8370691 - 8370745
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||| |||||||    
T  8370691 acattgattacctcttcctttactccacacatctttatttttcattgatgtgatt 8370745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16264232 - 16264178
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||  ||||||||||| |||||||| |||||||||||||||    
T  16264232 acattgattaccacttctgttgctccacacgtctttgttattcattggtgtgatt 16264178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27038173 - 27038119
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||    
T  27038173 acattgattaccatttcatttgctccacacatcttagttattcattggtgtgatt 27038119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39040195 - 39040249
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||| ||||||||||||| || || ||||||||||||    
T  39040195 acattgattaccacttcctttgttccacacatctttattatttattggtgtgatt 39040249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 40592988 - 40593044
Alignment:
Q  2 cattgattaccacttcctttgctccacacatct---ttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||   ||||| |||||||||||||||    
T  40592988 cattgattaccacttcctttgctccacacatctttgttgttattcattggtgtgatt 40593044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 37466173 - 37466120
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||| |||||||||||| |||||||||||| || ||||||||||||    
T  37466173 cattgattaccatttcctttgctcctcacatctttgttatttattggtgtgatt 37466120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 47649622 - 47649569
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  47649622 attgattaccacttccttttgttccacacatctttgttattcattggtgtgatt 47649569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 48438095 - 48438043
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||    
T  48438095 attgattaccatttcctttgctccacacatccttgttattcattgatgtgatt 48438043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 8126582 - 8126531
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgat 54  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||| ||||    
T  8126582 attgaataccacttcctttgctccacacatctttgttatttattggtatgat 8126531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 21711102 - 21711055
Alignment:
Q  8 ttaccacttcctttgctccacacatctttgtttttca-ttggtgtgat 54  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  21711102 ttaccacttcctttgctccacacatctttgttattcatttggtgtgat 21711055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 7167105 - 7167063
Alignment:
Q  20 ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  7167105 ttgctccacacatctttgtttttcattggtgtgagtttcaacc 7167063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27975153 - 27975214
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttt--tcattggtgtgattatcaa 60  Q
    |||||||||| |||||||||| ||||||| |||||||||||  || ||||||||||||||||    
T  27975153 acattgattatcacttcctttactccacatatctttgttttaatctttggtgtgattatcaa 27975214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 4387239 - 4387276
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt 40  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  4387239 attgattactacttcctttgctccacacatctttgttt 4387276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 40844533 - 40844489
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattg 47  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||    
T  40844533 attgattaccacttcttttactccacacatctttgttattcattg 40844489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 42771737 - 42771682
Alignment:
Q  107 aatggtgaattggataaacaaataaatgttagagatgcacactagatcaataacgaa 163  Q
    ||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||    
T  42771737 aatggtggattgaataaacaaataaatgtta-agagacacactagatcaataacgaa 42771682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 8477242 - 8477193
Alignment:
Q  4 ttgattaccact-tcctttgctccacacatctttgtttttcattggtgtga 53  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  8477242 ttgattaccactatcttttgctccacacatctttg-ttttcattggtgtga 8477193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1309739 - 1309687
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  1309739 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 1309687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32143206 - 32143154
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  32143206 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 32143154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33386870 - 33386922
Alignment:
Q  1 acattgattaccacttcc-tttgctccacacatctttgtttttcattggtgtga 53  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||    
T  33386870 acattgattaccacttccttttactccacacatctttg-tttacattggtgtga 33386922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27452842 - 27452802
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgttt 40  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  27452842 acatagattaccacttccttttgctccacacatctttgttt 27452802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44173 - 44248
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaacctgaactcaaaacat 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  44173 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaaccggaactcacaacat 44248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37046 - 37100
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37046 acattgattaccacttcctttgctccacacatctttgtttttcatcggtgtgatt 37100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2479222 - 2479148
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaacctgaactcaaaaca 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  2479222 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 47263563 - 47263489
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaacctgaactcaaaaca 75  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  47263563 acattgattaccacttcctttgctccacgcatctttgtttttcattggtgtgattatcaaccggaactcacaaca 47263489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 35960695 - 35960643
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35960695 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 35960643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 4796886 - 4796938
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4796886 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 4796938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 46516527 - 46516579
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46516527 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 46516579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 49091543 - 49091491
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49091543 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 49091491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9190221 - 9190276
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9190221 acattgattaccacttccttttgctccacacatctttgtttttcattggtgtgatt 9190276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44848899 - 44848958
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaa 60  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  44848899 acattgattagcactacctttgctccacacatccttgtttttcattggtgtgattatcaa 44848958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21988789 - 21988735
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  21988789 acattgattaccacttcctttgctccacacatcattatttttcattggtgtgatt 21988735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 9235772 - 9235825
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  9235772 cattgattaccacttcctttgctccacacatctttgttatttattggtgtgatt 9235825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9185376 - 9185431
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  9185376 acattgattaccacttccttttgctccacacatctttgtttttcattagtgtgatt 9185431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 55822 - 55768
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||||||||    
T  55822 acattgattaccacttcctttacttcacacatctttgttattcattggtgtgatt 55768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21983165 - 21983111
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  21983165 acattgattaccacttcatttgctccatacatcattgtttttcattggtgtgatt 21983111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 23403228 - 23403281
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  23403228 cattgattatcacttcctttgctccacacatctttgttattcattggtatgatt 23403281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29159684 - 29159631
Alignment:
Q  3 attgattaccacttcc-tttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  29159684 attgattaccacttccctttgctccacacatctttgttattcattggtgtgatt 29159631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33332666 - 33332718
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  33332666 attgattaccacttcctttggtccacacatcttggttattcattggtgtgatt 33332718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 28617443 - 28617481
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgttt 40  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28617443 cattgattaccacttcctttgctccacacatctttgttt 28617481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 3047133 - 3047081
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||| ||||| |||||||||||||||||||| |||||||||||||||||    
T  3047133 cattgattatcactttctttgctccacacatctttg-ttttcattggtgtgatt 3047081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 20283971 - 20283918
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||    
T  20283971 cattgattatcacttcttttgctccacacatctttgttattcataggtgtgatt 20283918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2580271 - 2580217
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  2580271 acattgattaccacttccttttgctccacacatctttg-tttacattggtgtgatt 2580217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 2647913 - 2647952
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttttt 42  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  2647913 attgattaccatttcctttgctccacacatctttgttttt 2647952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 2057819 - 2057777
Alignment:
Q  20 ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  2057819 ttgctccacacatctttgtttttcattggtgtgagtttcaacc 2057777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 2647962 - 2647995
Alignment:
Q  22 gctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||| |||||||||||||||    
T  2647962 gctccacacatctttgttattcattggtgtgatt 2647995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18408649 - 18408597
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  18408649 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 18408597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 1533658 - 1533709
Alignment:
Q  2 cattgattaccact-tcctttgctccacacatctttgtttttcattggtgtga 53  Q
    |||||||||||||| |  ||||||||||||||||||| |||||||||||||||    
T  1533658 cattgattaccactatattttgctccacacatctttg-ttttcattggtgtga 1533709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5757690 - 5757765
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaacctgaactcaaaacat 76  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||    
T  5757690 acattgattaccacttcctttgctccacacttctttgtttttcattggtgtgattatcaaccggaactcacaacat 5757765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21355921 - 21355865
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355921 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattat 21355865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 31086677 - 31086730
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31086677 cattgattaccacttcctttgctccacacatctttgttcttcattggtgtgatt 31086730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 5572812 - 5572864
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5572812 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 5572864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31936471 - 31936416
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31936471 acattgattaccacttccttttgctccacacatctttgtttttcattggtgtgatt 31936416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 5017687 - 5017740
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  5017687 cattgattaccacttcctttgctccacacatctttgttattcattagtgtgatt 5017740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18232726 - 18232674
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  18232726 attgattaccacttcctttgcttcacacatctttgttattcattggtgtgatt 18232674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31979394 - 31979342
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||||||    
T  31979394 attgattaccacttcctttgctccacacatctttgttatttagtggtgtgatt 31979342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 21801566 - 21801616
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  21801566 attgattaccacttcctt--ctccacacatctttgttattcattggtgtgatt 21801616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 10077381 - 10077433
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||| | | |||||| ||||||||    
T  10077381 attgattaccacttcctttgctccacacatcttcgctattcattagtgtgatt 10077433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 4629843 - 4629790
Alignment:
Q  3 attgattaccacttcctttg-ctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||  |||||||||||||| || |||||||||||||||    
T  4629843 attgattaccacttccttttactccacacatctttattattcattggtgtgatt 4629790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 27165584 - 27165547
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtt 39  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27165584 cattgattacgacttcctttgctccacacatctttgtt 27165547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 24436182 - 24436230
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgt 51  Q
    ||||||||||| |||| || ||||||||||||||||| |||||||||||    
T  24436182 attgattaccatttcccttactccacacatctttgttattcattggtgt 24436230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 5674987 - 5675036
Alignment:
Q  4 ttgattaccact-tcctttgctccacacatctttgtttttcattggtgtga 53  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  5674987 ttgattaccactatcttttgctccacacatctttg-ttttcattggtgtga 5675036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30126031 - 30126072
Alignment:
Q  20 ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
T  30126031 ttgctccacacatctttg-ttttcattggtgtgattttcaacc 30126072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 22963580 - 22963529
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||| |||||||||||| | |||| | ||||||||||||    
T  22963580 attgattaccacttccttagctccacacatcatagtttgt-attggtgtgatt 22963529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23824813 - 23824864
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||| |||||||||||| | |||| | ||||||||||||    
T  23824813 attgattaccacttccttagctccacacatcatagtttgt-attggtgtgatt 23824864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37069651 - 37069592
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37069651 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaa 37069592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21536783 - 21536837
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21536783 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 21536837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 29651692 - 29651639
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29651692 cattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 29651639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 47099039 - 47099090
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgat 54  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47099039 attgattaccacttcctttgctccacacatctttgttattcattggtgtgat 47099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26645111 - 26645165
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  26645111 acattgattaccacttcatttgctccacacatctttgttattcattggtgtgatt 26645165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 16124732 - 16124785
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  16124732 cattgattaccacttcctttgcttcacacatctttgttattcattggtgtgatt 16124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 27104584 - 27104637
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27104584 attgattaccacttccttttgctccacacatctttgtttttcattggtgtgatt 27104637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 40816949 - 40816998
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtg 52  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40816949 attgattaccacttcctttgctccacacatctttgttattcattggtgtg 40816998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 775553 - 775501
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  775553 attggttaccacttcctttgctccacacatctttgttattcattggtgtgatt 775501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13598277 - 13598225
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  13598277 attgattaccacttcctttactccacacatctttgttattcattggtgtgatt 13598225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 9024045 - 9024098
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  9024045 cattgattaccactttctctgctccacacttctttgtttttcattggtgtgatt 9024098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 47704153 - 47704206
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  47704153 attgattaccacttccttttgctccacacatctttgttattcattgatgtgatt 47704206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 50521318 - 50521371
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||| |||||||    
T  50521318 cattgattaccacttcctttactccacacatctttattttttattgatgtgatt 50521371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 19072807 - 19072755
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||| |||||||||| |||||| ||||||||| |||||||||||||||    
T  19072807 attgattactacttcctttgttccacatatctttgttattcattggtgtgatt 19072755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 19120697 - 19120645
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||| |||||||||| |||||| ||||||||| |||||||||||||||    
T  19120697 attgattactacttcctttgttccacatatctttgttattcattggtgtgatt 19120645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3281591 - 3281539
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| |||  |||||||||||| |||||||||||||||    
T  3281591 acattgattaccacttcctttactc--cacatctttgttattcattggtgtgatt 3281539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 17345734 - 17345782
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtg 52  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  17345734 cattgattactacttcctttgctccacacatctttg--tttcattggtgtg 17345782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 47103056 - 47103107
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgat 54  Q
    ||||||||||||||| |||||||||||| ||||| || ||||||||||||||    
T  47103056 attgattaccacttcatttgctccacacgtctttattattcattggtgtgat 47103107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 8870587 - 8870547
Alignment:
Q  15 ttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  8870587 ttcctttgttccacacatatttgtttttcattggtgtgatt 8870547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 9476127 - 9476091
Alignment:
Q  19 tttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9476127 tttgctctacacatctttgtttttcattggtgtgatt 9476091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13604837 - 13604891
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||||    
T  13604837 acattgattatcacttccttttgctccacacatctttg-tttacattggtgtgatt 13604891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 22819307 - 22819268
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttt 41  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  22819307 cattgattaccattttctttgctccacacatctttgtttt 22819268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19359059 - 19359111
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  19359059 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 19359111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19361649 - 19361701
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  19361649 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 19361701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19380289 - 19380341
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  19380289 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 19380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24202981 - 24203033
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  24202981 acatagattaccactcccttttgctccacacatctttg-ttttcattggtgtga 24203033  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28259391 - 28259465
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaacctgaactcaaaaca 75  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  28259391 acattgattattacttcctttgctccacacatctttgtttttcattggtgtgattatcaaccggaactcacaaca 28259465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23078686 - 23078740
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23078686 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 23078740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36757975 - 36758029
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36757975 acattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 36758029  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42039883 - 42039937
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42039883 acattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 42039937  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 16940424 - 16940477
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16940424 cattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 16940477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 17011089 - 17011142
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17011089 cattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 17011142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 10445660 - 10445714
Alignment:
Q  2 cattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10445660 cattgattaccacttccttttgctccacacatctttgtttttcattggtgtgatt 10445714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13569211 - 13569157
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  13569211 acattgattaccacttcctttactccacacatctttgttattcattggtgtgatt 13569157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 8390368 - 8390421
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  8390368 cattgattaccacttcctttactccacacatctttatttttcattggtgtgatt 8390421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 20522102 - 20522049
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  20522102 cattgattaccacttccttttctccacacatctttgttattcattggtgtgatt 20522049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21629831 - 21629780
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21629831 attgattaccacttcctttgctccacacatctttg-ttttcattggtgtgatt 21629780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 33528836 - 33528884
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtg 50  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33528836 cattgattaccacttcctttgctccacacatctttgttattcattggtg 33528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10707467 - 10707521
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  10707467 acattgattaccacttcttttgctccacacatctttgttattcatgggtgtgatt 10707521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 8039941 - 8039888
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  8039941 attgattaccacttccttttgctccacacatctttgttattcattggtgtgatt 8039888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 17865085 - 17865032
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  17865085 cattgattaccacttccttttctccacacatttttgttattcattggtgtgatt 17865032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 40014810 - 40014757
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  40014810 cattgattactacttcctttgctccatacatctttgtttgtcattggtgtgatt 40014757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 34388740 - 34388688
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  34388740 attgattaccacttcctttgctccacacatcttcgttatttattggtgtgatt 34388688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 11099144 - 11099205
Alignment:
Q  2 cattgattaccacttcct-ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||| | ||||||    
T  11099144 cattgattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaacc 11099205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 31055923 - 31055887
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  31055923 attgattaccacttcctttgctccacacatctttgtt 31055887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 33118017 - 33117974
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcatt 46  Q
    |||||||||||||||||||| |||||||||||||||| ||||||    
T  33118017 attgattaccacttcctttgatccacacatctttgttattcatt 33117974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 34682550 - 34682600
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtg 52  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  34682550 attgattaccactttcttttgctccacacatctttgttattcattggtgtg 34682600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 14699214 - 14699263
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtg 52  Q
    ||||||||||||||||||||||||||||||| ||| | ||||||| ||||    
T  14699214 attgattaccacttcctttgctccacacatcattgatattcattgatgtg 14699263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 32178460 - 32178423
Alignment:
Q  18 ctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||| |||||||||||||||    
T  32178460 ctttgctccacacatctttgttattcattggtgtgatt 32178423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25398378 - 25398317
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||    
T  25398378 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtgagtttcaacc 25398317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25403516 - 25403455
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||    
T  25403516 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtgagtttcaacc 25403455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 27149081 - 27149119
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgttt 40  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  27149081 cattgattatcactttctttgctccacacatctttgttt 27149119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3491636 - 3491584
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  3491636 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 3491584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 9296623 - 9296670
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  9296623 gattaccactaccttttgctccacacatctttg-ttttcattggtgtga 9296670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 39482800 - 39482764
Alignment:
Q  19 tttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  39482800 tttgctccacacatctttgttattcatttgtgtgatt 39482764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7412220 - 7412161
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaa 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7412220 acattcattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaa 7412161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19175973 - 19176025
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19175973 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 19176025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4455911 - 4455857
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  4455911 acattgattaccacttcctttgctccacacatctttgatattcattggtgtgatt 4455857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 5702698 - 5702751
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  5702698 cattgattaccacttcatttgctccacacatctttgttattcattggtgtgatt 5702751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9766036 - 9766088
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  9766036 attgattatcacttcctttgctccacacatctttgttattcattggtgtgatt 9766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 6127100 - 6127047
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  6127100 attgattaccacttccttttgctccacacatctttgttattcattggtgtgatt 6127047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 4696819 - 4696871
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  4696819 attgattaccacttcctttgttccacacatctttgttattcattgatgtgatt 4696871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19752609 - 19752663
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttg-tttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttttttcattggtgtgatt 19752663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 26403446 - 26403496
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtg 52  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  26403446 attgattaccacttccttttgctccacacatctttgttattcattggtgtg 26403496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 36979257 - 36979196
Alignment:
Q  2 cattgattaccacttcct-ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||| | ||||||    
T  36979257 cattgattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaacc 36979196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 10689379 - 10689421
Alignment:
Q  20 ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  10689379 ttgctccacacatctttgtttttcattggtgtgagtttcaacc 10689421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 6813559 - 6813507
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||  |||||||| ||||||||||| |||||||||||||||||    
T  6813559 cattgattaccactcactttgctcaacacatctttg-ttttcattggtgtgatt 6813507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23799794 - 23799845
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||    
T  23799794 attgattaacactttctttgctccacacatattt-tttttcattggtgtgatt 23799845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 5990774 - 5990813
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttt 41  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  5990774 cattgattactacttcctttgctccgcacatctttgtttt 5990813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7493282 - 7493334
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||| ||||||||||||||||||||| | |||||  ||||||||||||    
T  7493282 acattgattactacttcctttgctccacacatcatagtttt--attggtgtgatt 7493334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 4760293 - 4760354
Alignment:
Q  2 cattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    ||||||||||||||  || | |||||||||||||||||||||||||| ||||| | ||||||    
T  4760293 cattgattaccactatctctagctccacacatctttgtttttcattgatgtgagtttcaacc 4760354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26287786 - 26287734
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  26287786 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 26287734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26313037 - 26312985
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  26313037 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 26312985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 30655520 - 30655460
Alignment:
Q  2 cattgattaccacttcct-ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    ||||||||||||||  || |||||||||||||||||| ||||||||||||||| | ||||||    
T  30655520 cattgattaccactatctcttgctccacacatctttg-ttttcattggtgtgagtttcaacc 30655460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31071442 - 31071494
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  31071442 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 31071494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 28307421 - 28307386
Alignment:
Q  19 tttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28307421 tttgctccacacatctttg-ttttcattggtgtgatt 28307386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9353544 - 9353620
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttg-tttttcattggtgtgattatcaacctgaactcaaaacat 76  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||    
T  9353544 acattgtttaccacttcctttgctccacacatctttgttttttcattggtgtgattatcaaccgaaactcacaacat 9353620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14520112 - 14520058
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14520112 acattgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 14520058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 19588627 - 19588575
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19588627 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 19588575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11917189 - 11917243
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  11917189 acattgattaccacttcctttgcttcacacatctttgttattcattggtgtgatt 11917243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 42126625 - 42126675
Alignment:
Q  5 tgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42126625 tgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 42126675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 28832142 - 28832089
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  28832142 cattgattaccacttcctttgctccacacatctttgttattcattggtatgatt 28832089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 11182050 - 11182102
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  11182050 attgattaccacttactttgctccacacatctttgttattcattggtgtgatt 11182102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3880184 - 3880131
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  3880184 attgattaccacttccttttgctccacacatctttgttattcattggtgtgatt 3880131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 17004175 - 17004228
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  17004175 attgattaccacttccttttgctccacacctctttgtttttcattggtgtgatt 17004228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 42127624 - 42127677
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  42127624 cattgattaccactttctttgctccacacatctttgttattcattagtgtgatt 42127677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 10281728 - 10281691
Alignment:
Q  18 ctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10281728 ctttgctccacacatctttgttattcattggtgtgatt 10281691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15464416 - 15464364
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  15464416 acattgattaccacttccttttgctccacacatctttg-tttacattggtgtga 15464364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38192056 - 38191995
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||    
T  38192056 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtgagtttcaacc 38191995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38219281 - 38219220
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||    
T  38219281 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtgagtttcaacc 38219220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36932563 - 36932615
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||||||||||| |||||||| |||||||||||||||| ||| |||||||||||    
T  36932563 acattgattacctcttccttttgctccacacatctttg-tttacattggtgtga 36932615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 85568 - 85514
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  85568 acattgattaccacttcctttgctctacacatctttgtttttcattggtgtgatt 85514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 25862238 - 25862290
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25862238 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 25862290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 54867063 - 54867011
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54867063 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatt 54867011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5147560 - 5147506
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  5147560 acattgattaccacttcctttgctccacacatcattgttattcattggtgtgatt 5147506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16624223 - 16624277
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16624223 acattgattatcacttcctttgctccacacatctttgttattcattggtgtgatt 16624277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16630894 - 16630948
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  16630894 acattgattaccagttcctttgctccacacatctttgttattcattggtgtgatt 16630948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 10047261 - 10047208
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  10047261 cattgattaccacttcctttgctccacacatttttgttattcattggtgtgatt 10047208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5143142 - 5143088
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  5143142 acattgattaccacttcctttgctccacacatcattgttattcattggtttgatt 5143088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38152654 - 38152708
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  38152654 acattgattaccacttcatttgctctacacatctttgttattcattggtgtgatt 38152708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5396888 - 5396929
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgttttt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5396888 acattgattaccacttcctttgctccacacatctttgttttt 5396929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 8689697 - 8689746
Alignment:
Q  6 gattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  8689697 gattaccacttcctttactccacacatctttgttattcattggtgtgatt 8689746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 24333692 - 24333639
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  24333692 attgattaccacttccttttgctccacacatctttgttattcattggtgtgatt 24333639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 3796737 - 3796790
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  3796737 attgattatcacttccttttgctccacacatctttgttattcattggtgtgatt 3796790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 5112122 - 5112070
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  5112122 cattgattaccactccctttgctccacacatttttg-ttttcattggtgtgatt 5112070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 5269409 - 5269446
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtt 39  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5269409 cattgattaccacttcctttgctccacacatctttgtt 5269446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 34496038 - 34496090
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||||||||    
T  34496038 cattgattaccgctacctttgctccacacatctttg-ttttcattggtgtgatt 34496090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 29760521 - 29760461
Alignment:
Q  3 attgattaccacttcct-ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||||| | ||||||    
T  29760521 attgattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaacc 29760461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39245874 - 39245822
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||| || ||||||||||||||| || |||||||||||||||    
T  39245874 attgattaccacttcattcgctccacacatctttattattcattggtgtgatt 39245822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 42599793 - 42599845
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||| ||||||||||| || |||||| ||||||||    
T  42599793 attgattaccacttcctttgcttcacacatctttattattcattagtgtgatt 42599845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 1983514 - 1983566
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||  ||||||||||||||||||||||||| |||||||| ||||||||    
T  1983514 cattgattattacttcctttgctccacacatctttg-ttttcatttgtgtgatt 1983566  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 6743636 - 6743680
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattg 47  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||    
T  6743636 attgattaccacttcctttgctcgacacttctttgttattcattg 6743680  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 24741820 - 24741760
Alignment:
Q  2 cattgattaccacttcct-ttgctccacacatctttgtttttcattggtgtgattatcaacc 62  Q
    ||||||||||||||  || |||||||||||||||||| ||||||||||||||| | ||||||    
T  24741820 cattgattaccactatctcttgctccacacatctttg-ttttcattggtgtgagtttcaacc 24741760  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28468740 - 28468792
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  28468740 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 28468792  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 36315427 - 36315464
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtt 39  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  36315427 cattgattaccacttcctttactccacacatttttgtt 36315464  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 36329636 - 36329673
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtt 39  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  36329636 cattgattaccacttcctttactccacacatttttgtt 36329673  T

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Target: scaffold1805 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1291 - 1236
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgt-ttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1291 acattgattaccacttcctttgctccacacatctttgttttttcattggtgtgatt 1236  T

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Target: scaffold0098 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45138 - 45065
Alignment:
Q  1 acattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattatcaacctgaactcaaaaca 75  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| | ||||||| ||||    
T  45138 acattgattaccacttcatttgctccacacatctttg-ttttaattggtgtgattatcaaacggaactcacaaca 45065  T

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Target: scaffold0184 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 29705 - 29758
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  29705 cattgattaccacttcctttgcttcacacatttttgtttttcattggtgtgatt 29758  T

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Target: scaffold0078 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 43139 - 43086
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  43139 cattgattaccacttcctttgcttcacacatttttgtttttcattggtgtgatt 43086  T

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Target: scaffold0078; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 23412 - 23359
Alignment:
Q  2 cattgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||||||||    
T  23412 cattgattaccacttcctttgctcaacacatctttactttttattggtgtgatt 23359  T

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Target: scaffold0006 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5562 - 5510
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  5562 attgattaccacttcctttactccacacatctttgttattcattggtgtgatt 5510  T

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Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 2373 - 2321
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||| | |||||||||||||||||||||||||||| ||| | |||||||||    
T  2373 attgatcaacacttcctttgctccacacatctttgttattcttcggtgtgatt 2321  T

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Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 133494 - 133548
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||||    
T  133494 acattgattatcacttccttttgctccacacatctttg-tttacattggtgtgatt 133548  T

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Target: scaffold0176 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17147 - 17095
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 55  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  17147 attgattaccacttcctttgctccacacatctttgttattcattcatgtgatt 17095  T

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Target: scaffold0148 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 10606 - 10556
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgtttttcattggtgtgatt 55  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  10606 gattaccacttctttttgctccacacatctttgttattcattggtgtgatt 10556  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24258 - 24310
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgtttttcattggtgtga 53  Q
    |||| |||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  24258 acatagattaccacttccttttgctccacacatctttg-tttacattggtgtga 24310  T

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Target: scaffold0188; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18165 - 18205
Alignment:
Q  1 acattgattaccacttccttt-gctccacacatctttgttt 40  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  18165 acatagattaccacttccttttgctccacacatctttgttt 18205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8633 - 8670
Alignment:
Q  1 acattgattaccacttcc-tttgctccacacatctttg 37  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8633 acattgattaccacttccttttgctccacacatctttg 8670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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