View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9378_low_6 (Length: 239)
Name: NF9378_low_6
Description: NF9378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9378_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33387762 - 33387984
Alignment:
| Q |
1 |
ctttcactgtcaagtggtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgact |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387762 |
ctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgact |
33387861 |
T |
|
| Q |
101 |
attgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387862 |
attgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaaca |
33387961 |
T |
|
| Q |
201 |
aagttttcatagcaccaagatgg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33387962 |
aagttttcatagcaccaagatgg |
33387984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38778285 - 38778504
Alignment:
| Q |
1 |
ctttcactgtcaagtggtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgact |
100 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| |
|
|
| T |
38778285 |
ctttaactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgtagtagtcgcgact |
38778384 |
T |
|
| Q |
101 |
attgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaaca |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
38778385 |
attgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgccctattattaacg |
38778484 |
T |
|
| Q |
201 |
aagttttcatagcaccaaga |
220 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
38778485 |
aagttgtcgtagcaccaaga |
38778504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 20817313 - 20817123
Alignment:
| Q |
30 |
tcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggt |
129 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| |||| | |||||||| ||||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
20817313 |
tcaaaatgagccacctgcatgaaatatcctgctagcattgtctttcttatgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagat |
20817214 |
T |
|
| Q |
130 |
taaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaaga |
220 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||| |||||| || ||||||||||| |
|
|
| T |
20817213 |
taaaccgagccatgatacgcactagctgttgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaaga |
20817123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University