View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_high_10 (Length: 378)
Name: NF9379_high_10
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 43322183 - 43322548
Alignment:
| Q |
7 |
aaaatcatataacattatagcctgtcttagtttgtaacttagtaccaattctaccctct--caaaaaactgtaccagttttactcttataaataacagtg |
104 |
Q |
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| T |
43322183 |
aaaatcatataacattatagcctgtcttagtttgtaacttagtaccaattctaccctctctcaaaaaactgtaccagttttactcttataaataacagtg |
43322282 |
T |
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| Q |
105 |
aacgtggtaatgtcattttagagaacaaaaaagaatatgttaaacaaacttaacctcgtgtatatttgacaaaagaaaaacttaacctcgtactttttct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43322283 |
aacgtggtaatgtcattttagagaacaaaaaagaatatgttaaacaaacttaacctcgtgtatatttgacaaaagaaaaacttaacctcgtactttttct |
43322382 |
T |
|
| Q |
205 |
tgaggtacattagtggtcccatttcagcc-tccggtg--attgggaattaaccacttttgatcgtcaaggcatttgcccgtgcgtggggttggttttgcc |
301 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43322383 |
tgaggtacattagtggtcccatttcagccttccggtgccattaggaattaaccacttttgatcgtcaaggcatttgcccgtgcgtggggttggttttgcc |
43322482 |
T |
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| Q |
302 |
gacaacggtacactaagaccgtaaactaccaccaaatattctcgtttggtctgtcccttactctgt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43322483 |
gacaacggtacactaagaccgtaaactaccaccaaatattctcgtttggtctgtcccttactctgt |
43322548 |
T |
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