View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_high_18 (Length: 264)
Name: NF9379_high_18
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 6519957 - 6520212
Alignment:
| Q |
1 |
catgagattctttctttttattccaatgattctcttacaaagtttacattttaccttaacaatggccaaagttggattttgtatgcttcttcaccgataa |
100 |
Q |
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| T |
6519957 |
catgatattctttctttttattcgaacgattcccttacaaagtttacattttaccttaacaatggtcaaagttggattttgtatgcttctacaccgataa |
6520056 |
T |
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| Q |
101 |
acttgagtcactgtcataggtatatagctacttctgaggagttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgt |
200 |
Q |
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| T |
6520057 |
acttgagtcacggtcataggtatatagctacttctgaggagttttctggcattattagaatagctttgtttccggattctgattcaaaaactgaagctgc |
6520156 |
T |
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| Q |
201 |
tcttgataggttcagtagttgttaccctgtgagcggtgatgctgttttcacaacac |
256 |
Q |
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| T |
6520157 |
tcttgataggttcagttgttgttaccctgtgagtggtaatgctgtttttacaacac |
6520212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 6528846 - 6528777
Alignment:
| Q |
142 |
ttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggt |
211 |
Q |
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| T |
6528846 |
ttttctggcacaattcgaatagctttattgccggattctgattcaaaacatgaggctgttcttgacaggt |
6528777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 6472565 - 6472663
Alignment:
| Q |
130 |
acttctgaggagttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct |
228 |
Q |
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| T |
6472565 |
acttctgaggccttttccggcatgattcggatagctttgttgccggattccaattcaaaaaacgaagatgtccttgataagtacagttcttgttaccct |
6472663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 6466094 - 6466027
Alignment:
| Q |
25 |
aatgattctcttacaaagtttacattttaccttaacaatggccaaagttggattttgtatgcttcttc |
92 |
Q |
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| T |
6466094 |
aatgattctcttacaaagcatacttttcagtttaacaatggtcaaacatggattttgtatgcttcttc |
6466027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 9664846 - 9664920
Alignment:
| Q |
154 |
attagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct |
228 |
Q |
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| T |
9664846 |
attaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttaccct |
9664920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 13535870 - 13535944
Alignment:
| Q |
154 |
attagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct |
228 |
Q |
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| T |
13535870 |
attaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttaccct |
13535944 |
T |
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