View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_high_19 (Length: 250)
Name: NF9379_high_19
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 34946943 - 34946718
Alignment:
| Q |
8 |
tggtgttgttggttaatgtaaagacactaccacaatgcaccgatgtggatgctcttattctccctatttttctctctctcaagtggtcaattggatgtat |
107 |
Q |
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| T |
34946943 |
tggtgttgttggttaatgtaaagacactaccacaatgcaccgatgtggatgctcttattctccctatttttctctctctcaagtggtcaattggatgtat |
34946844 |
T |
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| Q |
108 |
gtgtgtacaaaaacatttttcatcaaagagttcttcaactttttattgaattgtaaatttaaaaattgaaatatgtaaggaagaattatataatctcaaa |
207 |
Q |
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| T |
34946843 |
gtgtgta-aaaaatattttccatcaaagagttcttcaactttttattgaattgtaaatttaaaaattgaaatatgtcaggaagaattatacaatctcaaa |
34946745 |
T |
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| Q |
208 |
tattggttaaaacataagtaaagtttt |
234 |
Q |
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| T |
34946744 |
tattggttaaaacataagtaaagtttt |
34946718 |
T |
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