View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9379_high_4 (Length: 570)

Name: NF9379_high_4
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9379_high_4
NF9379_high_4
[»] chr3 (2 HSPs)
chr3 (1-332)||(14811344-14811675)
chr3 (404-552)||(14811748-14811896)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 14811344 - 14811675
Alignment:
Q  1 aaatgtaaatgaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaaccaatcgagcgggatcaaaacgtggccttttgatctcatca 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14811344 aaatgtaaataaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaaccaaccgagcgggatcaaaacgtggccttttgatctcatca 14811443  T
Q  101 gagcgaagcaaagtcaacccatacttatgaatgagaaagctatcatccattacaacccttgtacccaacctaagcataatcctctttttgttaccagtgg 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  14811444 gagcgaagcgaagtcaacccatacttatgaatgagaaagctatcatccattacaacccttgtacccaacctaagcataatgctctttctgttaccagtgg 14811543  T
Q  201 caaaggagccattaacactatcaacaacattgaaagtggtaataacatacactaaatgcccgaagaacaaaggtcctaagcggccaacacactaggatgg 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14811544 caaaggagccattaacactatcaacaacattgaaagtggtgataacatacactaaatgcccgaagaacaaaggtcctaagcggccaacacactaggatgg 14811643  T
Q  301 gattgttgcctgaatcttgttgccctacgaac 332  Q
    ||||||||||||||||||||||||||||||||    
T  14811644 gattgttgcctgaatcttgttgccctacgaac 14811675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 404 - 552
Target Start/End: Original strand, 14811748 - 14811896
Alignment:
Q  404 taatttgtcatggcgtatcaactcacatctatgtcgagcaaaattagctcaatgctaccaacacaaccacggaaaaagctggtctcaacggaccacctac 503  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  14811748 taatttttcatggcgtatcagctcacatctatgtcgagcaaaattagctcaatgctaccaacacgaccatggaaaaagctgctctcaacggaccacctac 14811847  T
Q  504 gaaccaccctaaccttgatcttccagtccaccctaccagttgttagaga 552  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14811848 aaaccaccctaaccttgatcttccagtccaccctaccagttgttagaga 14811896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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