View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_high_5 (Length: 457)
Name: NF9379_high_5
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 38622689 - 38622263
Alignment:
| Q |
19 |
attttgctttttatgttttgtcggggcaaaagacgacaatgcaaactattaaaaaattaccacagtttcttctccactatactgtttgattacctgcttt |
118 |
Q |
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| T |
38622689 |
attttgctttttatgttttgtcggggcaaaagacgacaatgcaaactattgaaaaattaccacactttcttctccactatactgtttgattacctgcttt |
38622590 |
T |
|
| Q |
119 |
gtaatcaacttgttgtataataaaggccatacttcaacttagtgatattggcattgtgaaaaagaagagggttgaaatgaggaactcttctgattggtta |
218 |
Q |
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| T |
38622589 |
gtaatcaacttgttgtataataaaggccatacttcaacttagtgatattggcattgtgaaaaagaagagggttgaaatgaggaactcttctgattggtta |
38622490 |
T |
|
| Q |
219 |
tatgcagatgatgctgcgacatgtggttcaccttattggattggtaaaggactcacttgtgtttgcttcaagcctaagggaaactgtcaaccaatctgca |
318 |
Q |
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| T |
38622489 |
tatgcagatgatgctgcaacatgtggttcaccttattggattggtaaaggactcacttgtgtttgcttcaagcctaagggaaactgtcaaccaatctgca |
38622390 |
T |
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| Q |
319 |
ttaatttgactcctttacaggtatttgtgttttaattaattacttgcctacttttgtaattaatttcattaattatttgtacaattttcaagcttttagt |
418 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38622389 |
ttaatttgactcctttacaggtatttgtgttttacttaattacttgcctac-tttgttattaatttcatt-attatttgtacaattttcaagcttttagt |
38622292 |
T |
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| Q |
419 |
ttctggaatgtgcttagttttggtctgtg |
447 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
38622291 |
ttctggaatgtgcttagttttggtttgtg |
38622263 |
T |
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