View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_13 (Length: 434)
Name: NF9379_low_13
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 171 - 418
Target Start/End: Complemental strand, 42037072 - 42036825
Alignment:
| Q |
171 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaatttggtttccatc |
270 |
Q |
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| T |
42037072 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaattcggtttccatc |
42036973 |
T |
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| Q |
271 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcgagccaattacttccataacagatttggagga |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42036972 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcaagccaattacttccataacagatttggagga |
42036873 |
T |
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| Q |
371 |
attaagatatctttacaacataacttgtcaatataaccattttccaca |
418 |
Q |
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| T |
42036872 |
attaagatatctttacaacataacttgtaaatataaccattttccaca |
42036825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 35588904 - 35589056
Alignment:
| Q |
18 |
agtattaacagaaaaaccaaactaagaggaagctaaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35588904 |
agtattaacagaaaaaccaaactaagaggaagctgaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaag |
35589003 |
T |
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| Q |
118 |
gatcagtagcaaattgtaactaattgtgagatattctagtttagtcgataaca |
170 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35589004 |
gaccagtagcaaattgtaactaattgtgagatattctagtttagtcgataaca |
35589056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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