View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_17 (Length: 397)
Name: NF9379_low_17
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 33453568 - 33453201
Alignment:
| Q |
17 |
atttactttgttgcatcagggcaatctttctgaatctgaaagcaaggtcatcagttgctat---caagaaggcctaggacagaatagtcttcacactttt |
113 |
Q |
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| T |
33453568 |
atttactttcttgcatcagggcaatctttctaaatctgaaagcaaggtcatcagttgctattatcaagaaggcctaggatagaatagtcttcacactttt |
33453469 |
T |
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| Q |
114 |
ggaatggaaaatcaaaatctcccatttttgtgttaattcatggtaatttgttggccatattggagttggattattcctacttttcattttgttctctatg |
213 |
Q |
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| T |
33453468 |
ggaatggaaaatcaaaatctcccatttttgtgttaattcatggtaatttgttggccatattggagttggattattcctacttttcattttgttctctatg |
33453369 |
T |
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| Q |
214 |
acttagttgatctttggaatttaaatgagttgttaagttacctctcacagtgttatcaaattatgtcatggataatgaatgtgcccctttcacagattat |
313 |
Q |
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| T |
33453368 |
acttagttggtctttggaatttaaatgagttgttaagttacttctcacagtgttatcaaattatgtcatggataatgaatg------tttcacagattat |
33453275 |
T |
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| Q |
314 |
ataaagttggttcaactgcaaatttcatctcacatgttattttgaggatcttctaaagaacaatgctctctgct |
387 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33453274 |
ataaagttggttcaacttcaaatttcatctcacatgttattttgaggatcttctaaagaacaatgctctatgct |
33453201 |
T |
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