View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9379_low_18 (Length: 392)

Name: NF9379_low_18
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9379_low_18
NF9379_low_18
[»] chr6 (8 HSPs)
chr6 (18-234)||(9911144-9911360)
chr6 (282-392)||(9911408-9911518)
chr6 (22-121)||(34871832-34871931)
chr6 (22-121)||(34873693-34873792)
chr6 (355-392)||(3209482-3209519)
chr6 (356-392)||(4878025-4878061)
chr6 (356-392)||(17327590-17327626)
chr6 (356-392)||(28152181-28152217)
[»] chr4 (9 HSPs)
chr4 (355-392)||(29205551-29205588)
chr4 (356-392)||(12895214-12895250)
chr4 (350-392)||(28470448-28470490)
chr4 (355-392)||(715544-715581)
chr4 (355-392)||(752870-752907)
chr4 (356-392)||(5775304-5775340)
chr4 (356-392)||(16184914-16184950)
chr4 (356-392)||(19482762-19482798)
chr4 (356-392)||(23292926-23292962)
[»] chr2 (3 HSPs)
chr2 (355-392)||(10535684-10535721)
chr2 (355-392)||(26769605-26769642)
chr2 (356-392)||(37419837-37419873)
[»] chr7 (5 HSPs)
chr7 (356-392)||(32093954-32093990)
chr7 (355-392)||(7328638-7328675)
chr7 (356-392)||(5409771-5409807)
chr7 (356-392)||(29763129-29763165)
chr7 (356-392)||(35862034-35862070)
[»] chr3 (8 HSPs)
chr3 (356-392)||(40052395-40052431)
chr3 (358-392)||(25775590-25775624)
chr3 (355-392)||(20503548-20503585)
chr3 (356-392)||(4990912-4990948)
chr3 (355-391)||(8842413-8842449)
chr3 (356-392)||(8903518-8903554)
chr3 (356-392)||(25074878-25074914)
chr3 (356-392)||(34185052-34185088)
[»] chr1 (8 HSPs)
chr1 (356-392)||(9630561-9630597)
chr1 (353-392)||(38078598-38078637)
chr1 (356-390)||(46940748-46940782)
chr1 (355-388)||(5944381-5944414)
chr1 (356-392)||(22947813-22947849)
chr1 (356-392)||(35702542-35702578)
chr1 (356-392)||(37598914-37598950)
chr1 (356-392)||(47989591-47989627)
[»] chr5 (7 HSPs)
chr5 (356-391)||(2436995-2437030)
chr5 (355-392)||(22423763-22423800)
chr5 (356-392)||(10298633-10298669)
chr5 (356-392)||(14873605-14873641)
chr5 (356-392)||(17123130-17123166)
chr5 (356-392)||(21576685-21576721)
chr5 (356-392)||(35017126-35017162)
[»] scaffold0793 (1 HSPs)
scaffold0793 (355-392)||(4820-4857)
[»] chr8 (1 HSPs)
chr8 (354-391)||(11944760-11944797)
[»] scaffold0475 (1 HSPs)
scaffold0475 (356-392)||(3391-3427)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 9911144 - 9911360
Alignment:
Q  18 tcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgcttttcatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9911144 tcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgcttttcatc 9911243  T
Q  118 atttggaattgatgaaaaaccctactccttgttctccttttcttcaggattttggttcttttcctcaaccagaaccttgtttgtctgctgtttctgtttc 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9911244 atttggaattgatgaaaaaccctactcctggttctccttttcttcaggattttggttcttttcctcaaccagaaccttgtttgtctgctgtttctgtttc 9911343  T
Q  218 atccttgtctcaaggta 234  Q
    |||||||||||||||||    
T  9911344 atccttgtctcaaggta 9911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 9911408 - 9911518
Alignment:
Q  282 acacatgcatcaaaatgttatatgttataagtaaatatttgttgccattctttaagatttagggtctgtgaattctatgaatcacgaacactcctcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| || |||||||||||||||    
T  9911408 acacatgcatcaaaatgttatatgttataagtaaatatttgttgacattctttaagatttagggtctgcgaattctatgaagcatgaacactcctcggat 9911507  T
Q  382 taggcgtgtcc 392  Q
    |||||||||||    
T  9911508 taggcgtgtcc 9911518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 34871832 - 34871931
Alignment:
Q  22 caaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgcttttcatcattt 121  Q
    |||||||||| ||||| || ||||||||| |||| ||  |||||||| ||||| |||||   |||||||| | |||||| ||||||||||||||||||||    
T  34871832 caaccgttaccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaagagtttgctgcgatggttgcttttcatcattt 34871931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 34873792 - 34873693
Alignment:
Q  22 caaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgcttttcatcattt 121  Q
    |||||||||| ||||| |||||||||||| |||| || ||||| ||| ||||| |||||   |||||||| | || ||| ||||||||||||||||||||    
T  34873792 caaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaagagtttgttgcgatggttgcttttcatcattt 34873693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 3209519 - 3209482
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  3209519 tctatgaagcacaaacactcctcggattaggcgtgtcc 3209482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 4878061 - 4878025
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcc 4878025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 17327590 - 17327626
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtcc 17327626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 28152217 - 28152181
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcc 28152181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 29205588 - 29205551
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||||||||||||||||||||||||||||    
T  29205588 tctatgaagcacgaacactcctcggattaggcgtgtcc 29205551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 12895214 - 12895250
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||||||||||||||||||||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcc 12895250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 350 - 392
Target Start/End: Complemental strand, 28470490 - 28470448
Alignment:
Q  350 tgaattctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||||||||| |||| |||||||||||||||||| |||||    
T  28470490 tgaattctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 715544 - 715581
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  715544 tctatgaagcacggacactcctcggattaggcgtgtcc 715581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 752870 - 752907
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  752870 tctatgaagcacggacactcctcggattaggcgtgtcc 752907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 5775304 - 5775340
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  5775304 ctatgaagcacggacactcctcggattaggcgtgtcc 5775340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 16184950 - 16184914
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtcc 16184914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 19482798 - 19482762
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcc 19482762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 23292926 - 23292962
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcc 23292962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 10535684 - 10535721
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||||||||||||||||||||||||||||    
T  10535684 tctatgaagcacgaacactcctcggattaggcgtgtcc 10535721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 26769642 - 26769605
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  26769642 tctatgaagcacggacactcctcggattaggcgtgtcc 26769605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 37419873 - 37419837
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcc 37419837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 32093954 - 32093990
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||||||||||||||||||||||||||||    
T  32093954 ctatgaagcacgaacactcctcggattaggcgtgtcc 32093990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 7328638 - 7328675
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  7328638 tctatgaagcacgaacactcatcggattaggcgtgtcc 7328675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 5409771 - 5409807
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcc 5409807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 29763129 - 29763165
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcc 29763165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 35862070 - 35862034
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  35862070 ctatgaagcacggacactcctcggattaggcgtgtcc 35862034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 40052431 - 40052395
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||||||||||||||||||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcc 40052395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 25775624 - 25775590
Alignment:
Q  358 atgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||| |||||||||||||||||||||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcc 25775590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 20503585 - 20503548
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  20503585 tctatgaagcacggacactcctcggattaggcgtgtcc 20503548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 4990912 - 4990948
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtgtcc 4990948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 8842449 - 8842413
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtc 391  Q
    |||||||| |||| |||||||||||||||||||||||    
T  8842449 tctatgaagcacggacactcctcggattaggcgtgtc 8842413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 8903554 - 8903518
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  8903554 ctatgaagcacgaacactcctcggattaggtgtgtcc 8903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 25074914 - 25074878
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcc 25074878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 34185052 - 34185088
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcc 34185088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 9630561 - 9630597
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9630561 ctatgaagcacgaacactcctcggattaggcgtgtcc 9630597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 38078598 - 38078637
Alignment:
Q  353 attctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  38078598 attctatgaagcacgaatactcctcggattaggcgtgtcc 38078637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 46940748 - 46940782
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgt 390  Q
    ||||||| |||||||||||||||||||||||||||    
T  46940748 ctatgaagcacgaacactcctcggattaggcgtgt 46940782  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 5944414 - 5944381
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgt 388  Q
    |||||||| |||||||||||||||||||||||||    
T  5944414 tctatgaagcacgaacactcctcggattaggcgt 5944381  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 22947849 - 22947813
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  22947849 ctatgaagcacggacactcctcggattaggcgtgtcc 22947813  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 35702542 - 35702578
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  35702542 ctatgaagcacggacactcctcggattaggcgtgtcc 35702578  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 37598950 - 37598914
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcc 37598914  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 47989627 - 47989591
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcc 47989591  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 2437030 - 2436995
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtc 391  Q
    ||||||| ||||||||||||||||||||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtc 2436995  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 22423763 - 22423800
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  22423763 tctatgaagcacggacactcctcggattaggcgtgtcc 22423800  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 10298669 - 10298633
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  10298669 ctatgaagcacggacactcctcggattaggcgtgtcc 10298633  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 14873641 - 14873605
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcc 14873605  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 17123166 - 17123130
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcc 17123130  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 21576685 - 21576721
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcc 21576721  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 35017162 - 35017126
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgtcc 35017126  T

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Target: scaffold0793 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 4820 - 4857
Alignment:
Q  355 tctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  4820 tctatgaagcacggacactcctcggattaggcgtgtcc 4857  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 11944797 - 11944760
Alignment:
Q  354 ttctatgaatcacgaacactcctcggattaggcgtgtc 391  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  11944797 ttctatgaagcacgaacactcatcggattaggcgtgtc 11944760  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 3427 - 3391
Alignment:
Q  356 ctatgaatcacgaacactcctcggattaggcgtgtcc 392  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  3427 ctatgaagcacggacactcctcggattaggcgtgtcc 3391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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