View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_20 (Length: 383)
Name: NF9379_low_20
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 6937627 - 6937266
Alignment:
| Q |
8 |
tggtgttagaagtagcatgaacagtgatgaagattcttcaattctaagaagggatagaattgataagaaatctgaacaagtcacttttgtgaatacagat |
107 |
Q |
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| T |
6937627 |
tggtgttagaagtagcatgaacagtgatgaagattcttcaattctacgaagggatagaattgataagaaatctgaacaagtcacttttgtgaatacagat |
6937528 |
T |
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| Q |
108 |
agtataagattaaatggtagcatgaagtttgaggtttgtgataaagatcgatgcattctctcctgtgttcttgagatgaaaaatgatgataatgataaga |
207 |
Q |
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| T |
6937527 |
agtataagattaaatggtagcatgaagtttgaggtttgtgataaagatcaatgcattctctcctgtgttcttgagatgaaaaatcatgataatgataaga |
6937428 |
T |
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| Q |
208 |
gatattggagtatgaattgtgaaacagaaatggcatctaatagtggttttttcaaaggaaaacatgtttctgttcctgtaattgaggtttatgttgctgg |
307 |
Q |
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| T |
6937427 |
gatattggagtatgaattgtgaaacagaaatggcatctaatagtggttttttcaaaggaaaacatgtttctgttcctgaaattgaggtttatgttgctgg |
6937328 |
T |
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| Q |
308 |
ttgtttctcaggaaaacctataatcttaactaggacactgcagatcaattgcaggaagaagc |
369 |
Q |
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| T |
6937327 |
ttgtttctcaggaaaacctataatcttaactagaacactgcagatcaattgcaggaagaagc |
6937266 |
T |
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