View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_24 (Length: 377)
Name: NF9379_low_24
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 41483277 - 41483472
Alignment:
| Q |
8 |
tggtgttccaggactacaggttcacatctttcctttaatatagtttatgtttaaagttagtatttgtataattaatgacttaaacattcatatttaaaga |
107 |
Q |
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| T |
41483277 |
tggtgttccaggactacaggttcacatctttcctttaatatagtttatgtttaaagttagtatttgtataattaatgacttaaacattcatatttaaaga |
41483376 |
T |
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| Q |
108 |
tatgcaaagagaagttgaagcaacctcaggtgtgggaggatgtgtctcatgtagaagggtaagtgcatgtataaaaactttgtaatacaaccactt |
203 |
Q |
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| T |
41483377 |
tatgcaaagagaagttgaagcaacctcaggtgtgggaggatgtgtctcatgtagaagggtaagtgcatgtataaaaactttgtaatacaaccactt |
41483472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 202 - 361
Target Start/End: Original strand, 41483495 - 41483654
Alignment:
| Q |
202 |
ttctttttcttcctagtgttaggtgatttatgtttgaatatgcagggccataattgtgaacattggggacataatggagagatggacaaattgtgtatac |
301 |
Q |
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| T |
41483495 |
ttctttttcttcctagtgttaggtgatttatgtttgaatatgcagggccataattgtgaacattggggacataatggagagatggacaaattgtgtatac |
41483594 |
T |
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| Q |
302 |
cagtaaattccatcactcattcacttaaaagttatttcttttatcaatgtttatataaat |
361 |
Q |
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| T |
41483595 |
cagtaaattccatcactcattcacttaaaagttatttcttttatcaatgtttatataaat |
41483654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 41491384 - 41491486
Alignment:
| Q |
214 |
ctagtgttaggtgatttatgtttgaatatgcagggccataattgtgaacattggggacataatggagagatggacaaattgtgtataccagtaaattcca |
313 |
Q |
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| T |
41491384 |
ctagtgttaggtgttttatgtttgaatatgcagggccataattgtgaacattggggacatgatggagagatggacaaattgtttataccggtaaattcca |
41491483 |
T |
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| Q |
314 |
tca |
316 |
Q |
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| T |
41491484 |
tca |
41491486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 41491221 - 41491335
Alignment:
| Q |
78 |
attaatgacttaaacattcatatttaaagatatgcaaagagaagttgaagcaacctcaggtgtgggaggatgtgtctcatgtagaagggtaagtgcatgt |
177 |
Q |
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| T |
41491221 |
attaatgacttaagaatttatatttaaagatctgcaaggagaagttgaagcagcctcaggtatgggaggatgtttctcatgtagaagggtaagttcatgt |
41491320 |
T |
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| Q |
178 |
ataaaaactttgtaa |
192 |
Q |
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| T |
41491321 |
agaagaactttgtaa |
41491335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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