View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_28 (Length: 353)
Name: NF9379_low_28
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 43506853 - 43506526
Alignment:
| Q |
11 |
cacagacccaaaactcctcgccgcgatgacccacgccatctccgacgtctcacaagcccgatcagtcctcaacctcataggcgatcggcccacccacgaa |
110 |
Q |
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| T |
43506853 |
cacagacccaaaactcctcgccgcgatgacccacgccatctccgacgtctcacaagcccgatcagtcctcaacctcataggcgatcggcccacccacgaa |
43506754 |
T |
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| Q |
111 |
gaagtcgacaatgccaaggctaaactcgtcgacctcgaagcacatttgttacgtcaattggaagagattgttgcccttcctcggcctcctgagattgatg |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43506753 |
gaagtcgacaatgcgaaggctaaactcgtcgacctcgaagcacatttgttacgtcaattggaagagattgttgcccttcctcggcctcctgagattgatg |
43506654 |
T |
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| Q |
211 |
aacaaaagtggataattcatgttacggaaagagaaactaaatgtagagaaaatgttgagaatgagaagcgtggttataaagagcttttgcaaaaagatga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43506653 |
aacaaaagtggataattcatgttacggaaagagaaactaaatgtagagaaaatgttgagaatgagaagcgtggttataaagagcttttgcaaaaagatga |
43506554 |
T |
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| Q |
311 |
gatgcatgaagcttatgagaagctactt |
338 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43506553 |
gatgcatgaagcttatgagaagctactt |
43506526 |
T |
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