View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_29 (Length: 353)
Name: NF9379_low_29
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 49698418 - 49698743
Alignment:
| Q |
20 |
ttgtggagcttcattgattaatgtcaaggagaagaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctagtgt |
119 |
Q |
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| T |
49698418 |
ttgtggaacttcattgattaatgtcaaggagaagaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctggtgt |
49698517 |
T |
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| Q |
120 |
tgcatggtgattaatcatataatgattgaacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattg |
219 |
Q |
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| T |
49698518 |
tgcatggtgattaatcatataatgattgaacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattg |
49698617 |
T |
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| Q |
220 |
ttactaatctctacggtgtgcaaaaatgatgtatgaaagccacaacgatgatgatgccttagatcatgagagaaatatgaacatgatggaaaatcataat |
319 |
Q |
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| T |
49698618 |
ttactaatctctacggtgtgcaaaaatgatgtatgaaagccacaacgatgatgatgccttagatcatgagagaaatatgaacatgatggaaaatcataat |
49698717 |
T |
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| Q |
320 |
ggagatggaattctcccggaacacga |
345 |
Q |
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| T |
49698718 |
ggagatggaattctcccggaacacga |
49698743 |
T |
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