View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9379_low_32 (Length: 347)

Name: NF9379_low_32
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9379_low_32
NF9379_low_32
[»] chr6 (2 HSPs)
chr6 (175-331)||(9911757-9911913)
chr6 (1-119)||(9911578-9911701)
[»] chr1 (2 HSPs)
chr1 (220-274)||(37617384-37617438)
chr1 (220-274)||(3233934-3233988)
[»] chr5 (2 HSPs)
chr5 (221-274)||(9107187-9107240)
chr5 (214-267)||(12857251-12857304)
[»] chr4 (4 HSPs)
chr4 (222-274)||(52315118-52315170)
chr4 (220-249)||(31851571-31851600)
chr4 (215-263)||(2244159-2244207)
chr4 (213-249)||(22523802-22523838)
[»] chr3 (2 HSPs)
chr3 (20-62)||(16000086-16000128)
chr3 (220-274)||(25447164-25447218)
[»] chr2 (1 HSPs)
chr2 (214-275)||(3312173-3312234)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 9911757 - 9911913
Alignment:
Q  175 acacatgcattaaacatttgttgaggtattttaagatctagggtttgtttggattgatttattcgagtttatctaatgtcgtaagttttgtgagaatgtt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9911757 acacatgcattaaacatttgttgaggtattttaagatctagggtttgtttggattgatttatttgagtttatctaatgtcgtaagttttgtgagaatgtt 9911856  T
Q  275 gtttgggtgatggaactcatgaaaacagcttatgacatgtcaacattatgtgtctgt 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9911857 gtttgggtgatggaactcatgaaaacagcttatgacatgtcaacattatgtgtctgt 9911913  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9911578 - 9911701
Alignment:
Q  1 ttagctgtgtaggcatgtctgtctgtgtcggg-----ttcgatgtcagtgtccgtatccgtgcttcacagtctgtgattgaattgaattatttgagttta 95  Q
    ||||||||||||  ||||||||||||||||||     |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  9911578 ttagctgtgtagcaatgtctgtctgtgtcgggccgggttcgatgtcagtgtccgtatccgtacttcacagtctgtgattaaattgacttatttgagttta 9911677  T
Q  96 tgtgctgacataacgaaacttatc 119  Q
    ||||||||||||||||||||||||    
T  9911678 tgtgctgacataacgaaacttatc 9911701  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 37617384 - 37617438
Alignment:
Q  220 tgtttggattgatttattcgagtttatctaatgtcgtaagttttgtgagaatgtt 274  Q
    |||||||||||| ||||| ||||||||||| || |||||||||||||||| ||||    
T  37617384 tgtttggattgacttatttgagtttatctattgccgtaagttttgtgagactgtt 37617438  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 3233934 - 3233988
Alignment:
Q  220 tgtttggattgatttattcgagtttatctaatgtcgtaagttttgtgagaatgtt 274  Q
    |||||||||||| ||||| ||| ||||||| || |||||||||||||||| ||||    
T  3233934 tgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgtt 3233988  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 9107240 - 9107187
Alignment:
Q  221 gtttggattgatttattcgagtttatctaatgtcgtaagttttgtgagaatgtt 274  Q
    ||||||||||| ||||| ||||||||||| || | |||||||||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtt 9107187  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 12857251 - 12857304
Alignment:
Q  214 agggtttgtttggattgatttattcgagtttatctaatgtcgtaagttttgtga 267  Q
    |||| |||||||||||| |||||| ||| ||||||| || ||||||||||||||    
T  12857251 agggcttgtttggattggtttatttgagcttatctattgacgtaagttttgtga 12857304  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 52315118 - 52315170
Alignment:
Q  222 tttggattgatttattcgagtttatctaatgtcgtaagttttgtgagaatgtt 274  Q
    |||||||||| ||||| ||||||||||| || |||||||||||||||| ||||    
T  52315118 tttggattgacttatttgagtttatctactgacgtaagttttgtgagattgtt 52315170  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 31851600 - 31851571
Alignment:
Q  220 tgtttggattgatttattcgagtttatcta 249  Q
    ||||||||||||||||||||||||||||||    
T  31851600 tgtttggattgatttattcgagtttatcta 31851571  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 2244207 - 2244159
Alignment:
Q  215 gggtttgtttggattgatttattcgagtttatctaatgtcgtaagtttt 263  Q
    |||| ||||||||||||||||| |||||||||||| || | ||||||||    
T  2244207 gggtctgtttggattgatttatccgagtttatctactgacataagtttt 2244159  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 22523838 - 22523802
Alignment:
Q  213 tagggtttgtttggattgatttattcgagtttatcta 249  Q
    ||||||||||||  |||||||||||||||||||||||    
T  22523838 tagggtttgtttctattgatttattcgagtttatcta 22523802  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 16000086 - 16000128
Alignment:
Q  20 tgtctgtgtcgggttcgatgtcagtgtccgtatccgtgcttca 62  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  16000086 tgtctgtgtcgtgttcggtgtccgtgtccgtatccgtgcttca 16000128  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 25447164 - 25447218
Alignment:
Q  220 tgtttggattgatttattcgagtttatctaatgtcgtaagttttgtgagaatgtt 274  Q
    |||||||||||| ||||| ||||||||||| || | |||||||||||||| ||||    
T  25447164 tgtttggattgacttatttgagtttatctactgacataagttttgtgagactgtt 25447218  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 3312234 - 3312173
Alignment:
Q  214 agggtttgtttggattgatttattcgagtttatctaatgtcgtaagttttgtgagaatgttg 275  Q
    |||| ||||||||||||  ||||| ||| ||||||| || |||||||||||||||| |||||    
T  3312234 agggcttgtttggattggcttatttgagcttatctactgacgtaagttttgtgagactgttg 3312173  T

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