View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_34 (Length: 308)
Name: NF9379_low_34
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 22440831 - 22440547
Alignment:
| Q |
16 |
tcaacagcctctatcaataccttatgttgcatatcagaattaggaacttgcatacgtcgagcagtacctattccagcatgaggtatatcaccatcaccac |
115 |
Q |
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| T |
22440831 |
tcaacagcctctatcaataccttatgttgcatatcagaattaggaacttgcatacgtcgagcagtacctattccagcatgaggtatatcaccatcaccac |
22440732 |
T |
|
| Q |
116 |
caatctcattagaggtatcaacaatcatgacacgcttgttgtaatcatttgccagcatccgagcaatttccctaatgattgtagtttttcctacacctgg |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22440731 |
caatctcattagaagtatcaacaatcatgacacgcttgttgtaatcatttgccagcatccgagctatttccctaatgattgtagtttttcctacacctgg |
22440632 |
T |
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| Q |
216 |
aggcccaataagcaacaaagaagacccatcttgaaccaaatcttgcaacaatttagcacttcctgaaattgctctaccaacacga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22440631 |
aggcccaataagcaacaaagaagacccatcttgaaccaaatcttgcaacaatttagcacttcctgaaattgctctaccaacacga |
22440547 |
T |
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