View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_36 (Length: 306)
Name: NF9379_low_36
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 47273561 - 47273839
Alignment:
| Q |
12 |
aaaggtcgagcgcttcttagctacgctatgcaatccactatggttcctatacaaatttgtgatgaggttgacataatatgtatagattttatttgggacg |
111 |
Q |
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| T |
47273561 |
aaaggtcgagcgcttcttagctacgctatgcaatccactatggttcctatacaaatttgtgatgaggttgacataatatgtatagattttatttgggacg |
47273660 |
T |
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| Q |
112 |
atactgagctcgcacacaaaattcaccctatctcttgggagaaaatttgcactcctaaaaagttggggggttgggactcaatacggtggcaatctatgaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47273661 |
atactgagctcgcacacaaaattcaccctatctcttgggagaaaatttgcactcctaaaaagttggggggttgggactcaatacggt-gcaatctatgaa |
47273759 |
T |
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| Q |
212 |
ccaagtgtacctcatgaaagcggaatgacaaatttgtaaaaggaaagatgatctttgggtgagaattatccgagctaagt |
291 |
Q |
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| T |
47273760 |
ccaagtgtccctcatgaaagcggaatgacaaatatgtaaaaggaaagatgatctttgggtgagaattatccgagctaagt |
47273839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 291
Target Start/End: Complemental strand, 23675866 - 23675712
Alignment:
| Q |
138 |
cctatctcttgggagaaaatttgcactcct-aaaaagttggggggttgggactcaatacggtggcaatctatgaaccaagtgtacctcatgaaagcggaa |
236 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||| ||||||| ||| ||| | | ||||||||||||| ||| ||||||||| | | |
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| T |
23675866 |
cctatctcacgggagaaagtttgcactccttaaaaagttggtgggttggaactgcgtaccggcacgatctatgaaccaaatgtctgtcatgaaagtgaga |
23675767 |
T |
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| Q |
237 |
tgacaaatttgtaaaaggaaagatgatctttgggtgagaattatccgagctaagt |
291 |
Q |
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| T |
23675766 |
tggcaaatttgtaacaggaaagatgatcttaggatgggaattattcgagataagt |
23675712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 23858945 - 23859099
Alignment:
| Q |
138 |
cctatctcttgggagaaaatttgcactcct-aaaaagttggggggttgggactcaatacggtggcaatctatgaaccaagtgtacctcatgaaagcggaa |
236 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||| ||||||| ||| ||| | | ||||||||||||| ||| ||||||||| | | |
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| T |
23858945 |
cctatctcacgggagaaagtttgcactccttaaaaagttggtgggttggaactgcgtaccggcacgatctatgaaccaaatgtctgtcatgaaagtgaga |
23859044 |
T |
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| Q |
237 |
tgacaaatttgtaaaaggaaagatgatctttgggtgagaattatccgagctaagt |
291 |
Q |
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|| ||||||||||| ||||||||||||||| || || ||||||| |||| ||||| |
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| T |
23859045 |
tggcaaatttgtaacaggaaagatgatcttaggatgggaattattcgagataagt |
23859099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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