View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_37 (Length: 303)
Name: NF9379_low_37
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 41511164 - 41510872
Alignment:
| Q |
1 |
acttattgaagctatgttacctctttgagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttaccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41511164 |
acttattgaagctatgttacctctttgagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttaccttt |
41511065 |
T |
|
| Q |
101 |
ttgtaatcattaacatattctttctctaactcctcaaaactgtttatgattacaccatatgatttcatttcagcttcttgcattttctcaggaaacccct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41511064 |
ttgtaatcattaacatattctttctctaactcctcaaaactgtttatgattacaccatatgatttcatttcagcttcttgcattttctcagcaaacccct |
41510965 |
T |
|
| Q |
201 |
tcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaattttgtcaggtatgccaggaatagagaaaaactctgtctctg |
293 |
Q |
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| T |
41510964 |
tcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaattttgtcaggtatgccaggaatagagaaaaactctgtctctg |
41510872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 154 - 293
Target Start/End: Complemental strand, 41520683 - 41520544
Alignment:
| Q |
154 |
accatatgatttcatttcagcttcttgcattttctcaggaaaccccttcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaatt |
253 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41520683 |
accatatgatttcatttcagcttcttgcgttttctcagaaaaccccttcatcttttcctctttcactgttcctgttatctgttcttttgtgacttgaatt |
41520584 |
T |
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| Q |
254 |
ttgtcaggtatgccaggaatagagaaaaactctgtctctg |
293 |
Q |
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| T |
41520583 |
ttgtcaggtatgccaggaatagagaaaaactctgtctctg |
41520544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 48532518 - 48532255
Alignment:
| Q |
1 |
acttattgaagctatgttacctctttgagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttaccttt |
100 |
Q |
| |
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||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||| ||| || |||||| |||| ||||| ||||| || |||| |
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| T |
48532518 |
acttattgaggctataatacctctttgtgccttatccaaaccatctttgttgcaaagtgaaactggtccaacaaaccataccttgccatttttttccttc |
48532419 |
T |
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| Q |
101 |
ttgtaatcattaacatattctttctctaactcctcaaaactgtttatgattacaccatatgatttcatttcagcttcttgcattttctcaggaaacccct |
200 |
Q |
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|||||||| ||||||||| ||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||| || ||||| ||||| |||| ||| |
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| T |
48532418 |
ttgtaatccttaacatatgctttctccaactcctcaaaagtgtttatgatttcaccatatgacttcatttcagcatcatgcatcttctccccaaactcct |
48532319 |
T |
|
| Q |
201 |
tcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaattttgtcaggtatgcc |
267 |
Q |
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||| ||| |||||| | ||||||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
48532318 |
tca---gttcacctttcaatattcctggtatctgctctttggtgacttgaatttggtcaggtatgcc |
48532255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 41536812 - 41536721
Alignment:
| Q |
17 |
ttacctctttgagccttatctaaaccatctttgttgcaaagtgcaacaggaccaacacaccaaaccttatcatttcttacctttttgtaatc |
108 |
Q |
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|||||||||||| ||||||| || ||| |||| | ||||| |||||||||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
41536812 |
ttacctctttgaaccttatccaagtaatcagtgttactaagtgatacaggaccaatacaccaaactttatcatttcttacctttttataatc |
41536721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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