View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9379_low_38 (Length: 295)

Name: NF9379_low_38
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9379_low_38
NF9379_low_38
[»] scaffold0514 (1 HSPs)
scaffold0514 (5-202)||(1605-1810)
[»] scaffold0470 (1 HSPs)
scaffold0470 (1-119)||(10012-10138)
[»] chr8 (27 HSPs)
chr8 (1-119)||(6620690-6620816)
chr8 (127-202)||(25430754-25430829)
chr8 (127-199)||(28713204-28713276)
chr8 (127-199)||(28720551-28720623)
chr8 (127-199)||(28728193-28728265)
chr8 (131-202)||(27300454-27300525)
chr8 (131-202)||(34838162-34838233)
chr8 (127-202)||(4148543-4148618)
chr8 (127-202)||(18550087-18550162)
chr8 (5-63)||(6595032-6595090)
chr8 (138-202)||(35701742-35701806)
chr8 (127-202)||(22836027-22836102)
chr8 (127-202)||(21649058-21649133)
chr8 (127-202)||(37471751-37471826)
chr8 (135-198)||(13924121-13924184)
chr8 (127-202)||(41776283-41776358)
chr8 (133-202)||(22203109-22203178)
chr8 (127-202)||(8233384-8233459)
chr8 (127-202)||(23265241-23265316)
chr8 (127-202)||(33692829-33692904)
chr8 (127-202)||(44001164-44001239)
chr8 (127-201)||(23709085-23709159)
chr8 (128-202)||(34578226-34578300)
chr8 (133-198)||(42651032-42651097)
chr8 (127-199)||(1646367-1646439)
chr8 (124-202)||(37294702-37294776)
chr8 (129-198)||(38939082-38939151)
[»] chr4 (25 HSPs)
chr4 (127-202)||(38960548-38960623)
chr4 (127-202)||(36110242-36110317)
chr4 (127-202)||(18944393-18944468)
chr4 (127-202)||(50291390-50291465)
chr4 (127-202)||(8614290-8614365)
chr4 (127-202)||(32294640-32294715)
chr4 (126-198)||(21766659-21766731)
chr4 (128-202)||(39699356-39699430)
chr4 (133-202)||(33777002-33777071)
chr4 (127-202)||(22893976-22894051)
chr4 (127-202)||(22945644-22945719)
chr4 (129-202)||(1727979-1728052)
chr4 (131-202)||(19807310-19807381)
chr4 (127-202)||(31413674-31413749)
chr4 (127-202)||(45678371-45678446)
chr4 (133-202)||(4878075-4878144)
chr4 (127-202)||(8487743-8487818)
chr4 (135-198)||(43307261-43307323)
chr4 (133-202)||(43983005-43983074)
chr4 (133-202)||(46799863-46799932)
chr4 (162-202)||(23133472-23133512)
chr4 (127-198)||(1868781-1868852)
chr4 (127-198)||(4577676-4577746)
chr4 (127-202)||(24310409-24310484)
chr4 (129-202)||(6093495-6093568)
[»] chr1 (29 HSPs)
chr1 (127-202)||(29638823-29638898)
chr1 (127-202)||(41564768-41564843)
chr1 (127-202)||(23399877-23399952)
chr1 (127-202)||(48962094-48962169)
chr1 (142-202)||(30414972-30415032)
chr1 (127-202)||(12990373-12990448)
chr1 (127-202)||(29094636-29094711)
chr1 (127-201)||(835980-836054)
chr1 (128-202)||(51666868-51666942)
chr1 (127-202)||(12972594-12972669)
chr1 (131-202)||(22674805-22674876)
chr1 (133-202)||(37947114-37947183)
chr1 (127-202)||(5574163-5574238)
chr1 (127-202)||(27954336-27954411)
chr1 (127-198)||(40118603-40118674)
chr1 (127-201)||(11897283-11897357)
chr1 (128-198)||(48389968-48390038)
chr1 (133-202)||(8577396-8577465)
chr1 (133-198)||(11121592-11121657)
chr1 (133-202)||(31244629-31244698)
chr1 (133-202)||(43105213-43105282)
chr1 (129-181)||(21263152-21263204)
chr1 (150-202)||(50460623-50460675)
chr1 (126-201)||(1100326-1100401)
chr1 (127-202)||(40053014-40053089)
chr1 (135-202)||(40240007-40240074)
chr1 (133-202)||(48336349-48336418)
chr1 (127-167)||(48257015-48257055)
chr1 (128-160)||(48689693-48689725)
[»] scaffold0014 (1 HSPs)
scaffold0014 (127-202)||(145155-145230)
[»] chr7 (20 HSPs)
chr7 (127-202)||(1709392-1709467)
chr7 (127-202)||(24380609-24380684)
chr7 (127-202)||(47945091-47945166)
chr7 (127-202)||(47950521-47950596)
chr7 (127-202)||(23034201-23034276)
chr7 (127-202)||(41910073-41910148)
chr7 (127-202)||(48639273-48639348)
chr7 (131-202)||(27704543-27704614)
chr7 (127-202)||(29923779-29923853)
chr7 (128-202)||(41538588-41538662)
chr7 (127-202)||(45335971-45336046)
chr7 (133-202)||(38197769-38197838)
chr7 (134-202)||(17039265-17039333)
chr7 (135-202)||(37848516-37848583)
chr7 (127-201)||(48383208-48383282)
chr7 (133-192)||(40207725-40207784)
chr7 (131-202)||(44185284-44185355)
chr7 (131-201)||(25272700-25272770)
chr7 (127-201)||(49142405-49142479)
chr7 (129-202)||(39765382-39765455)
[»] chr5 (21 HSPs)
chr5 (127-202)||(39032492-39032567)
chr5 (127-202)||(37821029-37821104)
chr5 (127-202)||(18729165-18729240)
chr5 (127-202)||(34693104-34693179)
chr5 (127-202)||(14126522-14126597)
chr5 (127-202)||(21771361-21771436)
chr5 (124-202)||(35616686-35616764)
chr5 (131-202)||(36899373-36899444)
chr5 (128-202)||(38919954-38920028)
chr5 (126-202)||(6458875-6458951)
chr5 (135-198)||(12203257-12203320)
chr5 (128-202)||(12612906-12612980)
chr5 (133-202)||(35595880-35595949)
chr5 (128-200)||(8442269-8442341)
chr5 (127-202)||(17574112-17574187)
chr5 (136-202)||(14522861-14522927)
chr5 (135-202)||(25585352-25585419)
chr5 (127-202)||(35924378-35924453)
chr5 (127-202)||(42364537-42364612)
chr5 (133-190)||(35578970-35579027)
chr5 (133-202)||(43152954-43153023)
[»] chr3 (31 HSPs)
chr3 (127-202)||(14838933-14839008)
chr3 (127-202)||(29555729-29555804)
chr3 (127-202)||(44689911-44689986)
chr3 (127-202)||(30664609-30664684)
chr3 (131-198)||(32152005-32152072)
chr3 (127-202)||(7351526-7351601)
chr3 (127-202)||(9027721-9027796)
chr3 (127-202)||(43149231-43149306)
chr3 (130-202)||(884645-884717)
chr3 (127-198)||(33971995-33972066)
chr3 (127-202)||(48117444-48117519)
chr3 (128-202)||(55264925-55264999)
chr3 (127-196)||(27276848-27276917)
chr3 (127-198)||(35368723-35368794)
chr3 (127-202)||(42888661-42888735)
chr3 (127-202)||(43220030-43220105)
chr3 (127-202)||(50745657-50745732)
chr3 (127-169)||(11404842-11404884)
chr3 (135-181)||(26280684-26280730)
chr3 (127-189)||(29846779-29846841)
chr3 (127-181)||(31763936-31763990)
chr3 (127-201)||(48490401-48490475)
chr3 (124-201)||(48205154-48205231)
chr3 (126-202)||(16295572-16295648)
chr3 (134-202)||(43894880-43894948)
chr3 (127-198)||(29057760-29057831)
chr3 (127-202)||(38296550-38296625)
chr3 (127-201)||(2935399-2935473)
chr3 (127-189)||(40821748-40821810)
chr3 (133-202)||(45966721-45966790)
chr3 (126-166)||(49361724-49361764)
[»] chr2 (35 HSPs)
chr2 (127-202)||(12257009-12257084)
chr2 (127-202)||(1096231-1096306)
chr2 (127-202)||(5852566-5852641)
chr2 (127-202)||(16463400-16463475)
chr2 (127-202)||(26387719-26387794)
chr2 (127-202)||(34141551-34141626)
chr2 (126-202)||(23141462-23141538)
chr2 (126-202)||(23553252-23553328)
chr2 (126-202)||(30340102-30340178)
chr2 (127-198)||(28679239-28679310)
chr2 (127-202)||(37064166-37064241)
chr2 (127-202)||(11152587-11152662)
chr2 (136-202)||(44897734-44897800)
chr2 (127-202)||(8757652-8757727)
chr2 (127-202)||(35705805-35705880)
chr2 (127-202)||(38027503-38027578)
chr2 (127-202)||(38598238-38598312)
chr2 (125-202)||(38533084-38533161)
chr2 (130-202)||(18749254-18749326)
chr2 (127-202)||(35518383-35518458)
chr2 (126-202)||(41156890-41156966)
chr2 (127-202)||(11828708-11828783)
chr2 (127-202)||(19523289-19523364)
chr2 (131-198)||(24491569-24491636)
chr2 (127-202)||(35007989-35008064)
chr2 (127-202)||(35203637-35203712)
chr2 (127-202)||(45202020-45202095)
chr2 (127-189)||(40115636-40115698)
chr2 (128-169)||(3681504-3681545)
chr2 (135-202)||(22296025-22296092)
chr2 (127-198)||(35798321-35798392)
chr2 (127-202)||(43205201-43205276)
chr2 (127-201)||(37076762-37076836)
chr2 (133-198)||(43515003-43515068)
chr2 (127-179)||(9384506-9384558)
[»] scaffold0024 (1 HSPs)
scaffold0024 (127-202)||(48762-48837)
[»] chr6 (10 HSPs)
chr6 (127-202)||(17442930-17443005)
chr6 (127-202)||(34792114-34792189)
chr6 (127-202)||(9395225-9395300)
chr6 (127-202)||(32135325-32135400)
chr6 (133-202)||(608555-608624)
chr6 (127-202)||(6997438-6997513)
chr6 (127-202)||(10557517-10557592)
chr6 (127-202)||(16121260-16121335)
chr6 (131-202)||(7303997-7304068)
chr6 (162-202)||(27790158-27790198)
[»] scaffold0058 (1 HSPs)
scaffold0058 (133-202)||(3051-3120)
[»] scaffold0036 (1 HSPs)
scaffold0036 (130-202)||(54553-54625)


Alignment Details
Target: scaffold0514 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 1605 - 1810
Alignment:
Q  5 gagaggttacttttgttgggttaatgaaaagtatcacgttgctactagtgactgttttgg--------atgaaaagtatcattaccttactgctatggtt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||| |||||||||||||||    
T  1605 gagaggttacttttgttgggttaatgaaaagtatcacgttgctactagtgactgttttgagctcctttatgaaaagtatcattaacttactgctatggtt 1704  T
Q  97 tttcgttttaaatggggatcaatgcccatggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattg 196  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  1705 tttcgttttaaatggggatcaatacccatggagtagtgatatttgaacaactcttttggtacaacttttgggacaatcttgttatgttctcttcttattg 1804  T
Q  197 gtcaaa 202  Q
    ||||||    
T  1805 gtcaaa 1810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 10138 - 10012
Alignment:
Q  1 tcacgagaggttacttttgttgggttaatgaaaagtatcacgttgctactagtgactgttttg--------gatgaaaagtatcattaccttactgctat 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  10138 tcacgagaggttacttttgttgggttaatgaaaagtatcacgttgctactagtgactgttttgagctcctttatgaaaagtatcattaccttactgctat 10039  T
Q  93 ggtttttcgttttaaatggggatcaat 119  Q
    |||||||||||||||||||||||||||    
T  10038 ggtttttcgttttaaatggggatcaat 10012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 6620816 - 6620690
Alignment:
Q  1 tcacgagaggttacttttgttgggttaatgaaaagtatcacgttgctactagtgactgttttg--------gatgaaaagtatcattaccttactgctat 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  6620816 tcacgagaggttacttttgttgggttaatgaaaagtatcacgttgctactagtgactgttttgagctcctttatgaaaagtatcattaccttactgctat 6620717  T
Q  93 ggtttttcgttttaaatggggatcaat 119  Q
    |||||||||||||||||||||||||||    
T  6620716 ggtttttcgttttaaatggggatcaat 6620690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 25430829 - 25430754
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  25430829 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttattggtcaaa 25430754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 28713276 - 28713204
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  28713276 gagtagtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtattctcttcttattggtc 28713204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 28720623 - 28720551
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  28720623 gagtagtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtattctcttcttattggtc 28720551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 28728265 - 28728193
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  28728265 gagtagtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtattctcttcttattggtc 28728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 27300525 - 27300454
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  27300525 agtgatatttgaacaactctttcggtacaacttttgggacaatcttgttgtattctcttcttattggtcaaa 27300454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 34838162 - 34838233
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||    
T  34838162 agtgatatttgaacaactcttttggtacaacttttaggacaaccttgttgtgttctcttcttattggtcaaa 34838233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 4148543 - 4148618
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||| ||||||||||||||| |||||||| || ||| |||||||| ||||||||||||||||    
T  4148543 gagtagtgatatttgaacgactcttttggtacaacttttgggacaaccttattgtgttcccttcttattggtcaaa 4148618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 18550162 - 18550087
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| |||||    
T  18550162 gagtaatgatatttgaacaactattttggtacaacttttgggacaaccttgttgtgttctcttcttattgatcaaa 18550087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 6595090 - 6595032
Alignment:
Q  5 gagaggttacttttgttgggttaatgaaaagtatcacgttgctactagtgactgttttg 63  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6595090 gagaggttacttttgttgggttaatgaaaagtatcatgttgctactggtgactgttttg 6595032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 35701742 - 35701806
Alignment:
Q  138 tttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  35701742 tttgaacaattcttttggtacaacttttgggacaatcttgttatgttctcttcttattggtcaaa 35701806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 22836027 - 22836102
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||| | ||||||||||    
T  22836027 gagtaatgatatttgaacaacttttttgctacaatttttgggataaccttgttgtgctctcttttcattggtcaaa 22836102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 21649058 - 21649133
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| || ||||||||| |||||| ||||||||||||    
T  21649058 gagtaatgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctctttttattggtcaaa 21649133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 37471826 - 37471751
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| |||||||||||| |||||| | ||||||||||    
T  37471826 gagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctcttttcattggtcaaa 37471751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 13924184 - 13924121
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||  |||||||| ||||||    
T  13924184 atatttgaacaactcttttggtacaacttttgtgacaatcttgttgtcctctcttctcattggt 13924121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 41776358 - 41776283
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| || ||||||||| |||||| | ||||||||||    
T  41776358 gagtaatgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctcttttcattggtcaaa 41776283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 22203109 - 22203178
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||| ||||| |||||||| || ||||||||| |||||| | ||||||||||    
T  22203109 tgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctcttttgattggtcaaa 22203178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 8233384 - 8233459
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| ||||||||||||| || |||| |||||| |||| |||||| ||||||||  |||||||| ||||||||||    
T  8233384 gagtaatgatatttgaacatctatttttgtacaactttttggataaccttgttgttctctcttctcattggtcaaa 8233459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 23265241 - 23265316
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||| ||||||| ||||| ||||| ||||| || ||| |||||||| |||||| ||||||||||||    
T  23265241 gagtaatgatatttaaacaacttttttgttacaacttttgcgacaattttgttgtgctctctttttattggtcaaa 23265316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 33692904 - 33692829
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| || ||||||||||| ||  |||||||| |||||| | ||||||||||    
T  33692904 gagtaatgatatttgaacaacttttttgttataatttttgggacaactttgttgtgctctcttttcattggtcaaa 33692829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 44001239 - 44001164
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||||||||| |||| ||||| ||| || |||| |||  || ||||||||||||||||    
T  44001239 gagtaatgatatttgaacaactcttttgttacatttttttggacaaccttgatgttctcccttcttattggtcaaa 44001164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 23709159 - 23709085
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    ||||| || ||||||||||||| ||||| |||||||||||||| || |||||| || |||||| | |||||||||    
T  23709159 gagtaatgttatttgaacaacttttttgctacaatttttgggacaaccttgttatgctctcttttcattggtcaa 23709085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 34578226 - 34578300
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||| |||||||| ||||||| |||||||| ||||||||||| ||  |||||||  ||||||||||||| |||||    
T  34578226 agtaatgatattttaacaactattttggtataatttttgggacaactttgttgttctctcttcttattgatcaaa 34578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 42651097 - 42651032
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||||| ||||||||||| ||||| || || ||||||||  |||||||| ||||||    
T  42651097 tgatatttgaacaactattttggtacaacttttgagacaaccttgttgttctctcttctcattggt 42651032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 1646439 - 1646367
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtc 199  Q
    ||||| |||||||||||||||| ||||| || ||||||||| | |||||| ||||| |||||| | |||||||    
T  1646439 gagtaatgatatttgaacaacttttttgctataatttttggaacaatcttattgtgctctcttttcattggtc 1646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 37294776 - 37294702
Alignment:
Q  124 atggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||| ||||| | |||| |||||||||||| || ||||||||   ||| |||||||||||||||||    
T  37294776 atggagtagtgatatttaaacaa-tatttttgtacaatttttgagacaatcttgt---gttttcttcttattggtcaaa 37294702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 38939082 - 38939151
Alignment:
Q  129 gtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||||||||||  |||||  ||||||||||||||||| |||||  |||||||  |||||||| ||||||    
T  38939082 gtagtgatattttgacaaccattttggtacaatttttgagataactttgttgttctctcttctcattggt 38939151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 38960548 - 38960623
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  38960548 gagtagtgatatttgaacaactcttttgatacaatttttgggacaatcttgttgtgttctcttcttattggtcaaa 38960623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 36110317 - 36110242
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||    
T  36110317 gagtagtgatatttgaacaactcttttgatacaatttttgggacaaccttgttgtgttctcttcttattggtcaaa 36110242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 18944468 - 18944393
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||    
T  18944468 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttattgtgttctcttcttattggtcaaa 18944393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 50291465 - 50291390
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  50291465 gagtagtgttatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttattggtcaaa 50291390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 8614365 - 8614290
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  8614365 gagtagtgatatttgaacaactttttttgtacaatttttgggacaaccttgttgtgttttcttcttattggtcaaa 8614290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 32294640 - 32294715
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||| ||||||    
T  32294640 gagtagtgatatttgaacaactcttttggtataatttttgggacaaccttgttgtgttcttttcttattcgtcaaa 32294715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 21766731 - 21766659
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||| ||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||    
T  21766731 ggagcagtgatatttgaacaactcttttggtataacttttgggacaaccttgttgtgttctcttcttattggt 21766659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 39699356 - 39699430
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||| ||||| |||||| | || ||| |||||||||||||||||||||||||    
T  39699356 agtagtgatatttgaacaactcttttgatacaacttttggaacaaccttattgtgttctcttcttattggtcaaa 39699430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 33777071 - 33777002
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||| ||||||||||||    
T  33777071 tgatatttgaacaactattttggtacaatttttgggataaccttgttgttctctctttttattggtcaaa 33777002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 22894051 - 22893976
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| |||||||||||| |||||| ||||||||||||    
T  22894051 gagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctctttttattggtcaaa 22893976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 22945719 - 22945644
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| |||||||||||| |||||| ||||||||||||    
T  22945719 gagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctctttttattggtcaaa 22945644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 1727979 - 1728052
Alignment:
Q  129 gtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||| || | |||| ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  1727979 gtagtgatatttgaataatttttttagtacaatttttgggacaaccttgttgtgttttcttcttattggtcaaa 1728052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 19807310 - 19807381
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||| |||| ||||||||||||||| || ||||||||| | ||||||||||| |||||    
T  19807310 agtgatatttgaacaactttttttgtacaatttttgggacaaccttgttgtgatatcttcttattgatcaaa 19807381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 31413674 - 31413749
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| ||||| || || ||||||||| |||||| ||||||||||||    
T  31413674 gagtaatgatatttgaacaacttttttgctacaagttttgtgacaaccttgttgtgctctctttttattggtcaaa 31413749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 45678446 - 45678371
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||||||||| |||||| | || ||||||||  |||||| ||||||||||||    
T  45678446 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctctttttattggtcaaa 45678371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 4878144 - 4878075
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||| ||||| |||||||| || ||||||||| |||||| | ||||||||||    
T  4878144 tgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctcttttcattggtcaaa 4878075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 8487818 - 8487743
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| | ||||| ||||| ||||| || || ||||||||| |||||| ||||||||||||    
T  8487818 gagtaatgatatttgaacaatttttttgctacaacttttgagacaaccttgttgtgctctctttttattggtcaaa 8487743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 43307261 - 43307323
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||| ||||  ||||||||||||||||| ||||||||| |||||| ||||||||    
T  43307261 atatttgaacaacttttttt-tacaatttttgggataaccttgttgtgctctctttttattggt 43307323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 43983074 - 43983005
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||  ||||||||||| |||| ||| ||||| |||||  |||||||| ||||||||||    
T  43983074 tgatatttgaacaaccattttggtacaacttttaggacaatctagttgttctctcttctcattggtcaaa 43983005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 46799932 - 46799863
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||   |||||||||||||||||||| || ||||||||  ||| |||| ||||||||||    
T  46799932 tgatatttgaacaatcattttggtacaatttttgggacaaccttgttgttctctattctcattggtcaaa 46799863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 23133472 - 23133512
Alignment:
Q  162 ttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  23133472 ttttgggacaatcttgttgtgttctcttcttattgatcaaa 23133512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 1868781 - 1868852
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| |||||||||||||||| ||||  ||||| |||||||| || ||||||||| ||| || ||||||||    
T  1868781 gagtaatgatatttgaacaacttttttactacaacttttgggacaaccttgttgtgctctttttttattggt 1868852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 4577746 - 4577676
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| || ||||||||| |||||| | ||||||    
T  4577746 gagtaatgatatttgaacaact-ttttgctacaacttttgggacaaccttgttgtgctctcttttcattggt 4577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 24310409 - 24310484
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| | ||||| ||||| |||||||| || ||||||||| ||| || ||||| ||||||    
T  24310409 gagtaatgatatttgaacaatttttttgctacaacttttgggacaaccttgttgtgctctttttttattagtcaaa 24310484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 6093495 - 6093568
Alignment:
Q  129 gtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||| ||||||| |||||||| ||| |||| || ||| |||||||  |||||| |||| |||||||    
T  6093495 gtagtgatattttaacaactattttggtataatctttgagacaattttgttgttctctctttttatcggtcaaa 6093568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 29638898 - 29638823
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  29638898 gagtagtgatatttgaacaactcttttggtacaatttttgggacaattttgttgtgttctcttcttattggtcaaa 29638823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 41564768 - 41564843
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  41564768 gagtagtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtgttctcttcttattggtcaaa 41564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 23399877 - 23399952
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  23399877 gagtagtgatatttaaacaactcttttggtacaatttttgggacaaccttgttgtgttctcttcttattggtcaaa 23399952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 48962169 - 48962094
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  48962169 gagtattgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtgttctcttcttattggtcaaa 48962094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 30415032 - 30414972
Alignment:
Q  142 aacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  30415032 aacaactcttttggtacaacttttgggacaatcttgttgtgttctcttcttattggtcaaa 30414972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 12990373 - 12990448
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||| ||||| ||||||    
T  12990373 gagtagtgatatttgaacaactcttttgatacaacttttgggacaaccttgttgtgttctctttttatttgtcaaa 12990448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 29094636 - 29094711
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| || ||| |||||||||||||||||||||||||    
T  29094636 gagtaatgatatttgaacaactcttttgatacaacttttgggacaaccttattgtgttctcttcttattggtcaaa 29094711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 836054 - 835980
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| |||||||||    
T  836054 gagtagtgttatttgaacaactcttttggtacaacttttgggacaatcttgttattttctcttctcattggtcaa 835980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 51666942 - 51666868
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||| |||||||| |||||| ||||||||||||    
T  51666942 agtagtgatatttgaacaactattttgctataatttttgggataatattgttgtgctctctttttattggtcaaa 51666868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 12972594 - 12972669
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||| |||||||||| || |||| ||| ||| |||||||||||| || ||||||||||||    
T  12972594 gagtagtgatatttgaacaattcttttggtataacttttaggacaattttgttgtgttctttttttattggtcaaa 12972669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 22674876 - 22674805
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| | ||||||||||| |||||| ||||| ||||||| ||||||||| || |||||||    
T  22674876 agtgatatttgaacaatttttttggtacaacttttggaataattttgttgttttctcttctcatcggtcaaa 22674805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 37947114 - 37947183
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||| ||||| |||||||| || ||||||||  |||||||| ||||||||||    
T  37947114 tgatatttgaacaactattttgttacaacttttgggacaaccttgttgttctctcttctcattggtcaaa 37947183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 5574163 - 5574238
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||| || |||| || ||||||||||| ||  || ||||||||| || ||||||||||||    
T  5574163 gagtagtgatatttgaacaattcgtttgatataatttttgggacaactttattgtgttctttttttattggtcaaa 5574238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 27954411 - 27954336
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||| |||||| | ||||||||||| | ||  |||||||  |||||||| ||||||||||    
T  27954411 gagtagtgatatttgaacaattcttttagcacaatttttggaacaactttgttgttctctcttctcattggtcaaa 27954336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 40118603 - 40118674
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| |||||||||||||| | ||||| |||||||||||||| || ||||||||| | |||| ||||||||    
T  40118603 gagtaatgatatttgaacaatttttttgctacaatttttgggacaaccttgttgtgctttctttttattggt 40118674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 11897357 - 11897283
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    ||||| |||||||||||||||||||||| ||||||||||| || || |||| | |  || |||||||||||||||    
T  11897357 gagtaatgatatttgaacaactcttttgttacaatttttgtgacaaccttgatattctcccttcttattggtcaa 11897283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 48389968 - 48390038
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||||||||||||||||| |||||| ||| ||||||||||| ||  ||| |||||| |||| ||||||||    
T  48389968 agtagtgatatttgaacaattcttttagtataatttttgggacaactttgctgtgttatctttttattggt 48390038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 8577396 - 8577465
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| |||||||| || |||||||| || ||||||||  ||| |||| ||||||||||    
T  8577396 tgatatttgaacaactattttggtataacttttgggacaaccttgttgttctctattctcattggtcaaa 8577465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 11121657 - 11121592
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||||| |||||||| || ||||| || |||||||||||  |||||||| ||||||    
T  11121657 tgatatttgaacaactattttggtataacttttgtgacaatcttgttgttgtctcttctcattggt 11121592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 31244629 - 31244698
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| |||||||||||  ||||||| || | ||||||  |||||||| ||||||||||    
T  31244629 tgatatttgaacaactattttggtacaacatttgggacaaccatgttgttctctcttctcattggtcaaa 31244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 43105282 - 43105213
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| | |||||||||||||||||||| ||  || ||||  |||||| ||||||||||||    
T  43105282 tgatatttgaacaattattttggtacaatttttgggacaactttattgttctctctttttattggtcaaa 43105213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 21263204 - 21263152
Alignment:
Q  129 gtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgt 181  Q
    |||||||||||||||||||| |||| |||||||||||| || || ||||||||    
T  21263204 gtagtgatatttgaacaactatttttgtacaatttttgagacaaccttgttgt 21263152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 50460623 - 50460675
Alignment:
Q  150 ttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| ||| |||||||||| |||| ||||||||||||    
T  50460623 ttttgctacaatttttgggacaattttgttgtgttttctttttattggtcaaa 50460675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 1100401 - 1100326
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    ||||||||| |||||||||||||||||| |||||| ||||| || || |||||| |  | |||||| |||||||||    
T  1100401 ggagtagtgttatttgaacaactcttttagtacaacttttgtgacaaccttgttattctttcttctcattggtcaa 1100326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 40053089 - 40053014
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| ||||||| |||||||||||| |||| || ||  |||||||  |||||| | ||||||||||    
T  40053089 gagtagtgatattttaacaactattttggtacaatctttgagacaactttgttgttctctcttttcattggtcaaa 40053014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 40240007 - 40240074
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| ||||| ||||| |||||||| || ||||||||| | |||| | ||||||||||    
T  40240007 atatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctatcttttcattggtcaaa 40240074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 48336349 - 48336418
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||| ||||| |||| ||| || |||| |||  || ||||||||||||||||    
T  48336349 tgatatttgaacaactattttgttacaactttttggacaaccttgatgttctcccttcttattggtcaaa 48336418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 48257055 - 48257015
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgg 167  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  48257055 gagtaatgatatttgaacaacttttttgctacaatttttgg 48257015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 48689725 - 48689693
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaa 160  Q
    |||||||||||||||||||||||||||| ||||    
T  48689725 agtagtgatatttgaacaactcttttgggacaa 48689693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 145230 - 145155
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  145230 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttattggtcaaa 145155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 1709467 - 1709392
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  1709467 gagtagtgatatttgaacaactcttttggtataatttttgggacaatcttgttgtgttctctttttattggtcaaa 1709392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 24380609 - 24380684
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||||||||    
T  24380609 gagtagtgatatttgaacaactcttttggtacaacttttggaacaaccttgttgtgttctcttcttattggtcaaa 24380684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 47945166 - 47945091
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||    
T  47945166 gagtagtgatatttgaacaactcttttgatacaacttttgggacaaccttgttgtgttctcttcttattggtcaaa 47945091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 47950596 - 47950521
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||    
T  47950596 gagtagtgatatttgaacaactcttttgatacaacttttgggacaaccttgttgtgttctcttcttattggtcaaa 47950521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 23034201 - 23034276
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| |||||||||||||||    
T  23034201 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgctcttttcttattggtcaaa 23034276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 41910073 - 41910148
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||| ||||||||||||| |||| ||| || |||||||||||||||||||||||||||||    
T  41910073 gagtagtgatatttgaacaattcttttggtacaacttttaggacaaccttgttgtgttctcttcttattggtcaaa 41910148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 48639273 - 48639348
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||| |||||||||||    
T  48639273 gagtagtgatatttgaacaactcttttggtacaacttttggaacaaccttgttgtgttctcttcgtattggtcaaa 48639348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 27704614 - 27704543
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||| ||||| |||||||| ||  ||||||||||||||||||||||||||||    
T  27704614 agtgatatttgaacaactcttttgttacaacttttgggacaactttgttgtgttctcttcttattggtcaaa 27704543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 29923853 - 29923779
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||||||    
T  29923853 gagtagtgatatttgaacaactcttttggtacaactttt-ggacaaccttgttgtgttcttttcttattggtcaaa 29923779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 41538662 - 41538588
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||| ||||||| ||||| |||||||| || ||||||||||| |||||||||||||||||    
T  41538662 agtagtgatatttgaacaattcttttgatacaacttttgggacaaccttgttgtgttatcttcttattggtcaaa 41538588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 45336046 - 45335971
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||| ||||||||||||||| |||||||| || ||||||||  |||||| ||||||||||||    
T  45336046 gagtagtgatatttgaactactcttttggtacaaattttgggacaaccttgttgttctctctttttattggtcaaa 45335971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 38197838 - 38197769
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||| ||||| |||||||| |||||||||||| | |||| | ||||||||||    
T  38197838 tgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctatcttttcattggtcaaa 38197769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 17039333 - 17039265
Alignment:
Q  134 gatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||| | ||||| || ||||||||||| || |||||||||||||||| | ||||||||||    
T  17039333 gatatttgaacaatttttttgctataatttttgggacaaccttgttgtgttctcttttcattggtcaaa 17039265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 37848516 - 37848583
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| ||||| ||||| |||| |||||| ||||||||| |||||| | ||||||||||    
T  37848516 atatttgaacaacttttttgctacaacttttaggataaccttgttgtgctctcttttcattggtcaaa 37848583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 48383208 - 48383282
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    |||||||  ||||| ||||||| |||||||| ||||||||||| ||| || || | |||||||||||||||||||    
T  48383208 gagtagtattatttcaacaacttttttggtataatttttgggacaattttattattttctcttcttattggtcaa 48383282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 40207725 - 40207784
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttctt 192  Q
    ||||||||||| || | ||||||||||| |||||||| ||| ||||||||||||| ||||    
T  40207725 tgatatttgaataatttttttggtacaacttttgggacaattttgttgtgttctcctctt 40207784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 44185355 - 44185284
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||| ||||| ||||| || || ||  ||||  |||||||| ||||||||||    
T  44185355 agtgatatttgaacaactcttttgatacaacttttgagacaacctcattgttctctcttctcattggtcaaa 44185284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 25272770 - 25272700
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    |||| |||||||||||||||||| |||||| ||||| || || |||||| |  | ||||||||||||||||    
T  25272770 agtgttatttgaacaactcttttagtacaacttttgtgacaaccttgttattctttcttcttattggtcaa 25272700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 49142405 - 49142479
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    |||||||| ||||||||||||||||||  ||||| ||||| || || |||||| | || |||||| |||||||||    
T  49142405 gagtagtgttatttgaacaactcttttattacaacttttgtgacaaccttgttattttttcttctcattggtcaa 49142479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 39765382 - 39765455
Alignment:
Q  129 gtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||| ||| | || ||||||||| | ||||||||| | || | || ||||||||||||    
T  39765382 gtagtgatatttgaacaactatttagatataatttttggaacaatcttgtttttttttttttttattggtcaaa 39765455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 39032492 - 39032567
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||    
T  39032492 gagtagtgatatttgaacaactcttttgatacaatttttgggacaaccttgttgtgttctcttcttattggtcaaa 39032567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 37821029 - 37821104
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  37821029 gagtagtgatatttgaacaactattttggtacaacttttgggacaaccttgttgtgttctcttcttattggtcaaa 37821104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 18729165 - 18729240
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||    
T  18729165 gagtagtaatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctctttttattggtcaaa 18729240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 34693104 - 34693179
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||| |||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||    
T  34693104 gagtagtgatatttgaataactcttttgatacaacttttaggataaccttgttgtgttctcttcttattggtcaaa 34693179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 14126597 - 14126522
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||| |  |||||||| || |||| ||||||||||||||||||||||||    
T  14126597 gagtagtgatatttgaacaactcttttggtagagcttttgggacaaccttgatgtgttctcttcttattggtcaaa 14126522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 21771361 - 21771436
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||| || |||||||| || ||||||||||| |||| ||||||||||||    
T  21771361 gagtagtgatatttgaacaactcttttggtataacttttgggacaaccttgttgtgttatctttttattggtcaaa 21771436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 35616686 - 35616764
Alignment:
Q  124 atggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||| |||||||| || |||||||| || ||||||||  |||||||||||||||||||    
T  35616686 atggagtagtgatatttgaacaactattttggtataaattttgggacaaccttgttgttctctcttcttattggtcaaa 35616764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 36899373 - 36899444
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||| ||||||||||| |||||| | ||||||||| ||||||||| ||||| ||||||    
T  36899373 agtgatatttgaacaactattttggtacaacttttggaacaatcttgttttgttctctttttattagtcaaa 36899444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 38920028 - 38919954
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| ||||||||||||||||||||||||||| |||| ||| || ||||||||  |||||||| ||||||||||    
T  38920028 agtagagatatttgaacaactcttttggtacaacttttaggacaaccttgttgttctctcttctcattggtcaaa 38919954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 6458951 - 6458875
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||| |||||||||||||||| ||||| || ||||||||||| || ||||||||| |||||| | ||||||||||    
T  6458951 ggagtaatgatatttgaacaacttttttgctataatttttgggacaaccttgttgtgctctcttttaattggtcaaa 6458875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 12203320 - 12203257
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||  |||||||| ||||||    
T  12203320 atatttgaacaactcttttggtacaacttttgtgacaatcttgttgtcctctcttctcattggt 12203257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 12612906 - 12612980
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||| |||||||||||||||  ||||||||||| |||||||| || ||||||||  |||||||| ||||||||||    
T  12612906 agtaatgatatttgaacaaccattttggtacaacttttgggacaaccttgttgttctctcttctcattggtcaaa 12612980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 35595880 - 35595949
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||  |||||||||||||| |||||||||||| ||| || | ||||||||||    
T  35595880 tgatatttgaacaacttttttattacaatttttgggacaatcttgttgtgctcttttttcattggtcaaa 35595949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 8442341 - 8442269
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtca 200  Q
    |||| |||||||||||||||| |||||||| ||||||||| | ||| |||||||  |||||||| ||||||||    
T  8442341 agtaatgatatttgaacaactattttggtataatttttggaacaattttgttgttctctcttctcattggtca 8442269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 17574112 - 17574187
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||||||||| |||||||| || ||||||||  | |||||| | ||||||||    
T  17574112 gagtaatgatatttgaacaactattttggtacaacttttgggacaaccttgttgttctttcttctcactggtcaaa 17574187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 14522861 - 14522927
Alignment:
Q  136 tatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||| ||||| ||||| |||||||| |||||| ||||| | |||| ||||||||||||    
T  14522861 tatttgaacaacttttttgctacaacttttgggacaatcttattgtgctatctttttattggtcaaa 14522927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 25585352 - 25585419
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| ||||| ||||| |||||||| ||  |||||||||| |||| |||||| |||||    
T  25585352 atatttgaacaactattttgttacaacttttgggagaactttgttgtgttatctttttattgatcaaa 25585419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 35924453 - 35924378
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| ||||||||| ||||||||||||  |||||||||| || || ||||||||  |||||| ||||| ||||||    
T  35924453 gagtaatgatatttgtacaactcttttgaaacaatttttgagacaaccttgttgttctctctttttatttgtcaaa 35924378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 42364612 - 42364537
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||   |||| |||||||| || ||||||||||| |||| | ||||||||||    
T  42364612 gagtaatgatatttgaacaacttttttccaacaacttttgggacaaccttgttgtgttatcttttcattggtcaaa 42364537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 35579027 - 35578970
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttc 190  Q
    |||||||||||||| | |||||||| ||||||||||||||| || ||||  |||||||    
T  35579027 tgatatttgaacaattattttggtataatttttgggataattttattgttctctcttc 35578970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 43152954 - 43153023
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||||||||| | || ||| ||  |||||||  |||||||| ||||||||||    
T  43152954 tgatatttgaacaactattttggtacaactcttaggacaactttgttgttctctcttctcattggtcaaa 43153023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 14838933 - 14839008
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  14838933 gagtagtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtgttctctttttattggtcaaa 14839008  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 29555729 - 29555804
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||    
T  29555729 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttattagtcaaa 29555804  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 44689986 - 44689911
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||| |||||||| |||| |||||||| || |||||||||||||||| ||||||||||||    
T  44689986 gagtagtgatatttgaacaattcttttggaacaacttttgggacaaccttgttgtgttctctttttattggtcaaa 44689911  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 30664684 - 30664609
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||| |||| ||||||||||| |||||| | ||| ||||||||||||||| ||||||||||||    
T  30664684 gagtagtgatatttgaataacttttttggtacaacttttggaacaattttgttgtgttctctttttattggtcaaa 30664609  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 32152072 - 32152005
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||||||| |||||||||||||||| ||| ||  ||||||||||||||||||||||||    
T  32152072 agtgatatttgaacaacttttttggtacaatttttaggacaactttgttgtgttctcttcttattggt 32152005  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 7351526 - 7351601
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||| |||||||||||| ||||  | || |||||||| || |||||||||||||||||||||||||||||    
T  7351526 gagtagtgatttttgaacaactcatttgaaataacttttgggaaaaccttgttgtgttctcttcttattggtcaaa 7351601  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 9027796 - 9027721
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||||||||| |||||| | || ||||||||  |||||||||||||||||||    
T  9027796 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtcaaa 9027721  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 43149231 - 43149306
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||||||||| |||||| | || ||||||||  |||||||||||||||||||    
T  43149231 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtcaaa 43149306  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 884717 - 884645
Alignment:
Q  130 tagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||| ||||||| |||||||| |||||||| || ||| ||||||| |||||||||||||| |||||    
T  884717 tagtgatattttaacaactattttggtataatttttgagagaattttgttgttttctcttcttattgatcaaa 884645  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 33972066 - 33971995
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| |||||||||||||||| ||||||||||||||||| || || ||||||||  |||||||| ||||||    
T  33972066 gagtaatgatatttgaacaactattttggtacaatttttgagacaaccttgttgttctctcttctcattggt 33971995  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 48117519 - 48117444
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| || ||||||||| |||||| | ||||||||||    
T  48117519 gagtaatgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctcttttcattggtcaaa 48117444  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 55264999 - 55264925
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||| | ||||| || ||||||||||| ||  || |||| ||||||||||||||||||||    
T  55264999 agtagtgatatttgaacaatttttttgatataatttttgggacaactttattgtattctcttcttattggtcaaa 55264925  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 27276917 - 27276848
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattg 196  Q
    ||||| |||||||||||||||| ||||||||||||||||| || || |||||||| |||| || ||||||    
T  27276917 gagtaatgatatttgaacaactattttggtacaatttttgagacaaccttgttgttttctttttttattg 27276848  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 35368794 - 35368723
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| ||||||||||||||||  |||| ||||| |||||||| |||||||||||| |||||| | ||||||    
T  35368794 gagtaatgatatttgaacaacttgtttgctacaacttttgggacaatcttgttgtgctctcttttcattggt 35368723  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 42888661 - 42888735
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| || ||||||||||  || |||| ||||||||||| ||||||||||||    
T  42888661 gagtaatgatatttgaacaacttttttgttataatttttggg-caaccttgctgtgttctctttttattggtcaaa 42888735  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 43220030 - 43220105
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||| |||| ||| || |||||||| ||| |||||||  ||| |||| ||||||||||    
T  43220030 gagtagtgatatttgaacaacttttttagtataacttttgggacaattttgttgttctctattctcattggtcaaa 43220105  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 50745732 - 50745657
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| | ||||| || ||||||||||| || ||||||||| |||||| | ||||||||||    
T  50745732 gagtaatgatatttgaacaatttttttgctataatttttgggacaaccttgttgtgctctcttttcattggtcaaa 50745657  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 11404842 - 11404884
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttggga 169  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  11404842 gagtaatgatatttgaacaactattttggtacaatttttggga 11404884  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 26280684 - 26280730
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgt 181  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||    
T  26280684 atatttgaacaattattttggtataatttttgggataatcttgttgt 26280730  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 29846779 - 29846841
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctctt 189  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| || ||||||||| ||||||    
T  29846779 gagtaatgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctctt 29846841  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 31763990 - 31763936
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgt 181  Q
    ||||| |||||||| ||||||| |||||||||||||||||||| ||| |||||||    
T  31763990 gagtaatgatatttaaacaactattttggtacaatttttgggacaattttgttgt 31763936  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 48490401 - 48490475
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    |||||||| ||||||||||||||||||  ||||| ||||| || ||||||||| | || |||||| |||||||||    
T  48490401 gagtagtgttatttgaacaactcttttaatacaacttttgtgacaatcttgttattttttcttctcattggtcaa 48490475  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 48205231 - 48205154
Alignment:
Q  124 atggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    ||||||||||| |||||||||||||||||| |||||| ||||| || || |||||| | || |||||| |||| ||||    
T  48205231 atggagtagtgttatttgaacaactcttttagtacaacttttgtgacaaccttgttattttttcttctcattgatcaa 48205154  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 16295648 - 16295572
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||  |||||| ||||||||||| ||||| || ||  |||||||  |||||| ||||||||||||    
T  16295648 ggagtagtgatattttgacaactattttggtacaacttttgagacaactttgttgttctctctttttattggtcaaa 16295572  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 43894880 - 43894948
Alignment:
Q  134 gatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||| ||||| || ||||||||||| ||  |||||||| |||||| | ||||||||||    
T  43894880 gatatttgaacaacttttttgctataatttttgggacaactttgttgtgctctcttttcattggtcaaa 43894948  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 29057831 - 29057760
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| |||||||||||||| | ||||| ||||| |||||||| || ||||||||| |||||| | ||||||    
T  29057831 gagtaatgatatttgaacaatttttttgctacaacttttgggacaaccttgttgtgctctcttttcattggt 29057760  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 38296550 - 38296625
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||||||||| || ||||||| ||| || |||| | |  || ||||||||||||||||    
T  38296550 gagtaatgatatttgaacaactcttttgttataattttttggacaaccttgatattctcccttcttattggtcaaa 38296625  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 2935399 - 2935473
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    |||||||| |||||||||||||||||| |||||| ||||| || || |||||| |  | |||||| |||||||||    
T  2935399 gagtagtgttatttgaacaactcttttagtacaacttttgtgacaaccttgttattctttcttctcattggtcaa 2935473  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 40821748 - 40821810
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctctt 189  Q
    ||||| |||||||||||||||| ||||  ||||| |||||||| || ||||||||| ||||||    
T  40821748 gagtaatgatatttgaacaacttttttactacaacttttgggacaaccttgttgtgctctctt 40821810  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 45966790 - 45966721
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| | ||||||| ||| |||||||| | | ||||||| || | |||||||||||||||    
T  45966790 tgatatttgaacaaatattttggttcaacttttgggacagttttgttgttttatattcttattggtcaaa 45966721  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 49361724 - 49361764
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttg 166  Q
    ||||||||| |||||||||||||||||| |||||| |||||    
T  49361724 ggagtagtgttatttgaacaactcttttagtacaacttttg 49361764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 12257084 - 12257009
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  12257084 gagtagtgatatttgaacaacttttttggtacaatttttgggacaaccttgttgtgttttcttcttattggtcaaa 12257009  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 1096231 - 1096306
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| ||||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  1096231 gagtagtgatatttgaacaactcttttgatacaacttttaggacaattttgttgtgttctcttcttattggtcaaa 1096306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 5852641 - 5852566
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||| ||||||    
T  5852641 gagtagtgatatttgaacaactcttttggtaaaacttttgggacaaccttgttgtgttctcttcttatttgtcaaa 5852566  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 16463475 - 16463400
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||    
T  16463475 gagtaatgatatttgaacaactcttatggtacaacttttgggacaatcttgttgtgctctcttcttattggtcaaa 16463400  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 26387719 - 26387794
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| |||||||||||||||    
T  26387719 gagtagtgatatttgaacaactcttttgatacaacttttgggacaaccttgttgtgttcttttcttattggtcaaa 26387794  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 34141626 - 34141551
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||||||||||||| |||||| | ||  ||||||||||||||||||||||||||||    
T  34141626 gagtagtgatatttgaacaactcttttggtacaacttttggaacaactttgttgtgttctcttcttattggtcaaa 34141551  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 23141538 - 23141462
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||  |||||||| ||||||||||    
T  23141538 ggagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctctcttctcattggtcaaa 23141462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 23553328 - 23553252
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||  |||||||| ||||||||||    
T  23553328 ggagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctctcttctcattggtcaaa 23553252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 30340178 - 30340102
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||  |||||||| ||||||||||    
T  30340178 ggagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctctcttctcattggtcaaa 30340102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 28679310 - 28679239
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| |||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||    
T  28679310 gagtaatgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtattctcttcttattggt 28679239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 37064241 - 37064166
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||    
T  37064241 gagtactgatatttgatcaactcttttggtacaacttttgggataaccttgttgttttctcttctcattggtcaaa 37064166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 11152587 - 11152662
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| | ||||||||||  |||||||| ||||||||||||||||||| ||||||||||||    
T  11152587 gagtaatgatatttgaacaaattttttggtacagcttttgggacaatcttgttgtgttctctttttattggtcaaa 11152662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 44897800 - 44897734
Alignment:
Q  136 tatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||| ||||| |||||||| || |||||||||||||||| ||||||||||||    
T  44897800 tatttgaacaactcttttgatacaacttttgggacaaccttgttgtgttctctttttattggtcaaa 44897734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 8757727 - 8757652
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||||||||| |||||| | || ||||||||  |||||||||||||||||||    
T  8757727 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtcaaa 8757652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 35705805 - 35705880
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| |||||||||||| |||||| | ||||||||||    
T  35705805 gagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctcttttcattggtcaaa 35705880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 38027503 - 38027578
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| |||||||||||| ||| || |||||  | || |||||||||||||||||||||||||||||    
T  38027503 gagtagtgatatttaaacaactcttttagtataacttttgaaacaaccttgttgtgttctcttcttattggtcaaa 38027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 38598238 - 38598312
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||| |||| ||| || ||||| || || |||||||||||||||||||||||||||||    
T  38598238 gagtagtgatatttgaacaact-ttttagtataacttttgtgacaaccttgttgtgttctcttcttattggtcaaa 38598312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 38533084 - 38533161
Alignment:
Q  125 tggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||| || |||||||||||||||||||||| || ||||||||  ||| || | ||||||||||    
T  38533084 tggagtagtgatatttgaataattcttttggtacaatttttgggacaaccttgttgttctctattgtcattggtcaaa 38533161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 18749254 - 18749326
Alignment:
Q  130 tagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||| | |||||||| ||||||| ||| || ||||||| |||||||| ||||||||||||    
T  18749254 tagtgatatttgaacaaattttttggtataatttttaggacaaccttgttgcgttctctttttattggtcaaa 18749326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 35518458 - 35518383
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| ||  |||||||  |||||||||||||||||||    
T  35518458 gagtaatgatatttgaacaactattttgatacaacttttgggacaactttgttgttctctcttcttattggtcaaa 35518383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 41156890 - 41156966
Alignment:
Q  126 ggagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||| |||||||||||||| | ||||| ||||| |||||||| ||| |||||||| |||||| | ||||||||||    
T  41156890 ggagtaatgatatttgaacaatttttttgctacaacttttgggacaattttgttgtgctctcttttcattggtcaaa 41156966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 11828708 - 11828783
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||| ||| || ||||||||| |||||| | ||||||||||    
T  11828708 gagtaatgatatttgaacaacttttttgctacaacttttaggacaaccttgttgtgctctcttttcattggtcaaa 11828783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 19523289 - 19523364
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||| ||||||| |||||||||||||||||| | ||| || ||||  |||||| ||||||||||||    
T  19523289 gagtaatgatatttaaacaactattttggtacaatttttggtacaattttattgttctctctttttattggtcaaa 19523364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 24491569 - 24491636
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||||| ||||||| ||||| ||||| || |||||| ||||  |||||||||||||||    
T  24491569 agtgatatttgaacaattcttttgatacaacttttgagacaatcttattgttctctcttcttattggt 24491636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 35007989 - 35008064
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||  ||||| |||||||| || ||||||||| |||||| | ||||||||||    
T  35007989 gagtaatgatatttgaacaacttttttactacaacttttgggacaaccttgttgtgctctcttttcattggtcaaa 35008064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 35203637 - 35203712
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| | ||||| |||||||||||||| || ||||||||| | |||| | ||||||||||    
T  35203637 gagtaatgatatttgaacaatttttttgctacaatttttgggacaaccttgttgtgctatcttttcattggtcaaa 35203712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 45202020 - 45202095
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| || ||||||||| |||||| | |||| |||||    
T  45202020 gagtaatgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctcttttcattgatcaaa 45202095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 40115698 - 40115636
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctctt 189  Q
    ||||| |||||||||||||||| ||||  |||||||||||||| || ||||||||| ||||||    
T  40115698 gagtaatgatatttgaacaacttttttactacaatttttgggacaaccttgttgtgctctctt 40115636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 3681545 - 3681504
Alignment:
Q  128 agtagtgatatttgaacaactcttttggtacaatttttggga 169  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  3681545 agtagtgttatttgaacaactctttttgtacaatttttggga 3681504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 22296025 - 22296092
Alignment:
Q  135 atatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||| ||||  |||||||||||||| || ||||||||| ||| || | ||||||||||    
T  22296025 atatttgaacaactttttttctacaatttttgggacaaccttgttgtgctcttttttcattggtcaaa 22296092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 35798392 - 35798321
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    ||||| || ||||||||||||| ||||| || ||||||||||| || ||||||||| | |||| ||||||||    
T  35798392 gagtaatgttatttgaacaacttttttgttataatttttgggacaaccttgttgtgctttctttttattggt 35798321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 43205276 - 43205201
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| || ||||||||||||| ||||| ||||| |||||||| ||  |||||||| |||||| | ||||||||||    
T  43205276 gagtaatgttatttgaacaacttttttgctacaacttttgggacaactttgttgtgctctcttttcattggtcaaa 43205201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 37076836 - 37076762
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaa 201  Q
    ||||| || |||||||||||||||||| |||||||||||| || || |||||| |  | |||||| |||||||||    
T  37076836 gagtaatgttatttgaacaactcttttagtacaatttttgtgacaaccttgttattctttcttctcattggtcaa 37076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 43515068 - 43515003
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggt 198  Q
    |||||||||||||||||||||| ||||| |||||||| || |||  |||  |||||| ||||||||    
T  43515068 tgatatttgaacaactcttttgttacaacttttgggacaaccttaatgttctctctttttattggt 43515003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 9384558 - 9384506
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgtt 179  Q
    |||||||| ||||||||||||||||||  ||||| ||||| || |||||||||    
T  9384558 gagtagtgttatttgaacaactcttttaatacaacttttgtgacaatcttgtt 9384506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 48837 - 48762
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| ||||||| |||||||||||||| || |||||||||||||||||||||||||||||    
T  48837 gagtaatgatatttgaacaattcttttgatacaatttttgggacaaccttgttgtgttctcttcttattggtcaaa 48762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 17443005 - 17442930
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||| |||||    
T  17443005 gagtagtgatttttgaacaactcttttggtacaacttttgggacaaccttattgtgttctcttcttattgatcaaa 17442930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 34792189 - 34792114
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||| || ||||||||||||    
T  34792189 gagtagtgatatttgaacaactcttttggtataacttttgggacaaccttgttgtgttctttttttattggtcaaa 34792114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 9395225 - 9395300
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| |||||||||||| |||||| | ||||||||||    
T  9395225 gagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctcttatcattggtcaaa 9395300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 32135325 - 32135400
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||| ||| |||||||||||| |||||| | ||||||||||    
T  32135325 gagtaatgatatttgaacaacttttttgctacaacttttaggacaatcttgttgtgctctcttttcattggtcaaa 32135400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 608555 - 608624
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||||||||| | |||||| || ||||||||  |||||||| ||||||||||    
T  608555 tgatatttgaacaactattttggtacaactgttgggacaaccttgttgttctctcttctcattggtcaaa 608624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 6997438 - 6997513
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||| | ||||| ||||| |||||||| || ||||||||| |||||| | ||||||||||    
T  6997438 gagtaatgatatttgaacaatttttttgctacaacttttgggacaaccttgttgtgctctcttttcattggtcaaa 6997513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 10557592 - 10557517
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| ||||| |||||| | |||||||||||  |||||| | ||||||||||    
T  10557592 gagtaatgatatttgaacaacttttttgctacaacttttggaacaatcttgttgtactctcttttcattggtcaaa 10557517  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 16121335 - 16121260
Alignment:
Q  127 gagtagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    ||||| |||||||||||||||| ||||| || || |||||||| ||| |||||||| | |||| ||||||||||||    
T  16121335 gagtactgatatttgaacaacttttttgctataacttttgggacaattttgttgtgctatctttttattggtcaaa 16121260  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 7303997 - 7304068
Alignment:
Q  131 agtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||||||||||| ||||| ||||| || || ||  ||||  |||||||| ||||||||||    
T  7303997 agtgatatttgaacaactcttttgatacaacttttgagacaacctcattgttctctcttctcattggtcaaa 7304068  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 27790158 - 27790198
Alignment:
Q  162 ttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||| || |||||||||||||||| ||||||||||||    
T  27790158 ttttgggacaaccttgttgtgttctctttttattggtcaaa 27790198  T

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Target: scaffold0058 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 3120 - 3051
Alignment:
Q  133 tgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||||||| ||||| ||||| |||||||| ||  || ||||| |||||| | ||||||||||    
T  3120 tgatatttgaacaacttttttgctacaacttttgggacaactttattgtgctctcttttcattggtcaaa 3051  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 54553 - 54625
Alignment:
Q  130 tagtgatatttgaacaactcttttggtacaatttttgggataatcttgttgtgttctcttcttattggtcaaa 202  Q
    |||||||||||  |||||| |||||||||||| |||| || ||  |||||||  |||||| ||||||||||||    
T  54553 tagtgatattttgacaactattttggtacaatctttgagacaactttgttgttctctctttttattggtcaaa 54625  T

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