View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_39 (Length: 293)
Name: NF9379_low_39
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 3778967 - 3779239
Alignment:
| Q |
1 |
gcgtggcttaactccactaaggattttgtggagaatccactctttaaatttgtatgtcctatatagtgtgtacttactcacttctgtagtgtccttattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778967 |
gcgtggcttaactccactaaggattttgtggagaatccactctttaaatttgtatgtcctatatagtgtgtacttactcacttctgtagtgtccttattc |
3779066 |
T |
|
| Q |
101 |
ttcataatgaatagcaattctttcttgataaaaagaaaatctttttatttaccttattatgttgagactcccccttctttctctagtggttctgaaattt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
3779067 |
ttcataatgaatagcaattctttcttgataaaaagaaaatctttttatttaccttattatgttgagact--cccttctttctttagtggttctgaaattt |
3779164 |
T |
|
| Q |
201 |
caatttattattattatctctatgtttcacatgcttgaagaatatctcatttacacgttttggaaatagtggtag |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3779165 |
caatttattattattatctctatgtttcacatgcttgaagaatatctcatttacacgttttggaaatagtggtag |
3779239 |
T |
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