View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9379_low_41 (Length: 288)
Name: NF9379_low_41
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 22440570 - 22440295
Alignment:
| Q |
1 |
cctgaaattgctctaccaacacgacaagtaagaccaataattgtacctttccgatttctaatagcacttatcctatgcaatgttctactgattcctgctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22440570 |
cctgaaattgctctaccaacacgacaagtaagaccaataattgtacctttccgatttctaatagcacttatcctatgcaatgttctactgattcctgctc |
22440471 |
T |
|
| Q |
101 |
gattgtcgacagcaaaatcaccaacctgagcagtagcatactgaatatcctcaacagtgattggatactccgatataacaaaatccccggaaggaaaccg |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22440470 |
gattgtcaacagcaaaatcaccaacctgagcagtagcatactgaatatcctcaacagtgattggatactccgatataacaaaatccccggaaggaaaacg |
22440371 |
T |
|
| Q |
201 |
agccaacggtttcctccctaaatccataaccacttctatcaacatctgcacctccggatgctcactcacccgtctc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22440370 |
agccaacggtttcctccctaaatccataaccacttcgatcaacatctgcacctccggatgctcactcacccgtctc |
22440295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University