View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_42 (Length: 281)
Name: NF9379_low_42
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 27367363 - 27367628
Alignment:
| Q |
18 |
actatattgataataagtggttaaatatagcgaccaattgatagtatgtgatcaaaatataaggacctaattgatgtaagttagttaaatatatggacca |
117 |
Q |
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| T |
27367363 |
actatattgataataagcggttaaatatagcgaccaattgatagtatgtgatcaaaatataaggacctaattgatgtaagttagataaatatatggacca |
27367462 |
T |
|
| Q |
118 |
attcgacagtttagtagagtcggag-----------atattcataatctctggacctatctaagattgctctacaaagtcatatactaatttgatggttt |
206 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27367463 |
attcgagagtttagtagagtcggagacttgttggagatattcataatctctggacctatctaagattgccctacaaagtcatatactaatttgatggttt |
27367562 |
T |
|
| Q |
207 |
attttattattactattttgcttactatggttgaatcaagttagttctgg-ttttaggattctctg |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27367563 |
attttattattactattttgcttactatggttgaatcaagttagttctggtttttaggattctctg |
27367628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 38930956 - 38930853
Alignment:
| Q |
18 |
actatattgataataagtggttaaatatagcgaccaa-ttgatagtatgtgatcaaaatataaggacctaattgat-gtaagttagttaaatatatggac |
115 |
Q |
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|||| ||| |||||||||||||||||||| || ||| ||||||||| ||| | |||||||||||||||||||||| | ||| |||||||||| |||||| |
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| T |
38930956 |
actaaattcataataagtggttaaatataaagatcaaattgatagtaagtggttaaaatataaggacctaattgatagcaag-tagttaaatacatggac |
38930858 |
T |
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| Q |
116 |
caatt |
120 |
Q |
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||||| |
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|
| T |
38930857 |
caatt |
38930853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 1315122 - 1315047
Alignment:
| Q |
18 |
actatattgataataagtggttaaatatagcgaccaa-ttgatagtatgtgatcaaaatataaggacctaattgat |
92 |
Q |
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|||| ||||||| |||||||||||||||| || ||| ||||||||| ||| | ||||||||||||||||||||| |
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| T |
1315122 |
actaaattgatattaagtggttaaatataaggatcaaattgatagtaagtggttgaaatataaggacctaattgat |
1315047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 22994155 - 22994076
Alignment:
| Q |
71 |
aaaatataaggacctaattgat-gtaagttagttaaatatatggaccaattcgacagtttagtagagtcggagatattcat |
150 |
Q |
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| T |
22994155 |
aaaatataggtacctaattgatagtaaat-agttaaatataaggatcaacttgacagtttaatagagtcggagacattcat |
22994076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 23794243 - 23794322
Alignment:
| Q |
71 |
aaaatataaggacctaattgat-gtaagttagttaaatatatggaccaattcgacagtttagtagagtcggagatattcat |
150 |
Q |
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|||||||| | ||||||||||| |||| | ||||||||||| ||| ||| | ||||||||| |||||||||||| |||||| |
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| T |
23794243 |
aaaatataggtacctaattgatagtaaat-agttaaatataaggatcaacttgacagtttaatagagtcggagacattcat |
23794322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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