View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_44 (Length: 274)
Name: NF9379_low_44
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 40453442 - 40453697
Alignment:
| Q |
1 |
ctccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggccaagaaaaacactacttc |
100 |
Q |
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| T |
40453442 |
ctccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggccaagaaaaacactacttc |
40453541 |
T |
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| Q |
101 |
aaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaagtgactgaacatattgca |
200 |
Q |
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| T |
40453542 |
aaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaagtgactgaacatattgca |
40453641 |
T |
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| Q |
201 |
aacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagcc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453642 |
aacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagcc |
40453697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 20008263 - 20008124
Alignment:
| Q |
76 |
aaaaggccaagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaac |
175 |
Q |
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| T |
20008263 |
aaaaggccaagaaaatcactatttcattgctaaataataagaaaaataaaaaagcaaccaaggctacccgtgtccataaaaagaaaag---tactacatc |
20008167 |
T |
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| Q |
176 |
agaaaaagtgactgaacatattgcaaacaattactcttcaaaa |
218 |
Q |
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| T |
20008166 |
agaaaaacttactaaacaaattgcaaacaattactcttcaaaa |
20008124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 24973555 - 24973587
Alignment:
| Q |
186 |
actgaacatattgcaaacaattactcttcaaaa |
218 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
24973555 |
actgaacaaattgcaaacaattactcttcaaaa |
24973587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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