View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_48 (Length: 255)
Name: NF9379_low_48
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_48 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0514 (1 HSPs) |
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| [»] scaffold0470 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 6621081 - 6620841
Alignment:
| Q |
18 |
agaccgcagtttttagtgttgatgaaacaaaattgagaaaactattatttattttctgatttattctattatagttattaatatgtgctcaatagactac |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6621081 |
agaccgcagtttttagtgttgatgaaacaaaatcgagaaaattattatttattttctgatttattctattatagttattaatatgtgctcaatatactac |
6620982 |
T |
|
| Q |
118 |
tagaaaatttaattttaccaagagaaattagtaat-gnnnnnnnnnnnctatcactaaatattta--ctctaaattttcatatttatttcctttctaagc |
214 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6620981 |
tagaaaatttaattttaccaagagaaattagtaatggaaaaaaaaaatctatcactaaatatttactctctaaattttcatatttatttcctttctaagc |
6620882 |
T |
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| Q |
215 |
agaaagataaaataaatttgagtagaagggatttttacttt |
255 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
6620881 |
agaaagataaaataaatttgagtagaagggatatttacttt |
6620841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 6595270 - 6595165
Alignment:
| Q |
18 |
agaccgcagtttttagtgttgatgaaacaaaattgagaaaactattatttattttctgatttattctattatagttattaatatgtgctcaatagactac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |
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| T |
6595270 |
agaccgcagtttttagtgttgatgaaacaaaattgagaaaattattatttattttctgatttattttattatagttattaatatgtactcaatatactac |
6595171 |
T |
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| Q |
118 |
tagaaa |
123 |
Q |
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|||||| |
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| T |
6595170 |
tagaaa |
6595165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 6835170 - 6835072
Alignment:
| Q |
50 |
ttgagaaaactattatttattttctgatttattctattatagttattaatatgtgctcaatagactactagaaaatttaattttaccaagagaaattagt |
149 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| || ||| |||||||||||||| |
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| T |
6835170 |
ttgagaaaattattaattattttctgatttattctattatagttattataatgtgctcaataaactactagaacattcaa-tttgtcaagagaaattagt |
6835072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 6810734 - 6810620
Alignment:
| Q |
42 |
aaacaaaa-ttgagaaaactattatttattttctgatttattctattatagtt---attaatatgtgctcaatagactactagaaaatttaattttacca |
137 |
Q |
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|||||||| ||||||||| |||||||||| |||||| | |||||||||||||| ||| ||||||||||||| |||||||||| |||||| ||||| | |
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| T |
6810734 |
aaacaaaacttgagaaaattattatttatgttctgaatgattctattatagttataatttatatgtgctcaatttactactagaatatttaa-tttacaa |
6810636 |
T |
|
| Q |
138 |
agagaaattagtaatg |
153 |
Q |
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|||||||||||||||| |
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| T |
6810635 |
agagaaattagtaatg |
6810620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 6840497 - 6840397
Alignment:
| Q |
50 |
ttgagaaaactattatttattttctgatttattctattatagttattaatatgtgctcaataga----ctactagaaaatttaattttaccaagagaaat |
145 |
Q |
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||||||||| |||||||||||||||| ||||| ||| | |||||||||||||| ||||||| | |||||||||| |||| ||||||||||||||| |
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| T |
6840497 |
ttgagaaaattattatttattttctgttttatcctaatgtagttattaatatgcactcaatatactagctactagaaagattaa-tttaccaagagaaat |
6840399 |
T |
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| Q |
146 |
ta |
147 |
Q |
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|| |
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| T |
6840398 |
ta |
6840397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 6595169 - 6595130
Alignment:
| Q |
215 |
agaaagataaaataaatttgagtagaagggatttttacttt |
255 |
Q |
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||||||||||| |||||||||||||||||||| |||||||| |
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| T |
6595169 |
agaaagataaa-taaatttgagtagaagggatatttacttt |
6595130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 1142 - 1382
Alignment:
| Q |
18 |
agaccgcagtttttagtgttgatgaaacaaaattgagaaaactattatttattttctgatttattctattatagttattaatatgtgctcaatagactac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
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| T |
1142 |
agaccgcagtttttagtgttgatgaaacaaaattgagaaaactattatttattttctgatctattctattatagttattaatatgtgctcaatatattac |
1241 |
T |
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| Q |
118 |
tagaaaatttaattttaccaagagaaattagtaat-gnnnnnnnnnnnctatcactaaatattta--ctctaaattttcatatttatttcctttctaagc |
214 |
Q |
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||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1242 |
tagaaaatttaattttaccaagaaaaattagtaatggaaaaaaaaaaactatcactaaatatttactctctaaattttcatatttatttcctttctaagc |
1341 |
T |
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| Q |
215 |
agaaagataaaataaatttgagtagaagggatttttacttt |
255 |
Q |
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| T |
1342 |
ataaagataaaataaatttgagtagaagggatttttacttt |
1382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 10452 - 10258
Alignment:
| Q |
18 |
agaccgcagtttttagtgttgatgaaacaaaattgagaaaacta-ttatttattttctgatttattctattatagttattaatatgtgctcaatagacta |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10452 |
agacagcagtttttagtgttgatgaaacaaaattgagaaaattaattatttattttctgatttattctattatagttattaatatgtgctcaatatacta |
10353 |
T |
|
| Q |
117 |
ctagaaaatttaattttaccaagagaaattagtaatgnnnnnnnnnnnctatcactaaatattta--ctctaaattttcatatttatttcctttctaa |
212 |
Q |
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||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
10352 |
ctagaaaatttaa-tttaccaagagaaattagtgatg--aataaaaaactatcactaaatatttactctctaaattttcatatttatttcctctctaa |
10258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 10219 - 10177
Alignment:
| Q |
210 |
taagcagaaagataaaataaatttgagtagaagggatttttac |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10219 |
taagcagaaagataaaataaatttgagtagaagggatatttac |
10177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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