View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_57 (Length: 246)
Name: NF9379_low_57
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 35721987 - 35721765
Alignment:
| Q |
12 |
agttgtgactatagtctcttcactcttggatttataggttaaatttatgtgcatttactattttttggtataattgtgtttactatatatgaagtaagca |
111 |
Q |
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| T |
35721987 |
agttgtgactatactcccttcactcttggatttataggttaaatttatgtacatttactattttttggtataattgtgtttactat----gaagtaagca |
35721892 |
T |
|
| Q |
112 |
ttgacccctaagttaggatataataaatcaatcatttaaatccagttacgagcataacttttaaaataaatttgccccaaacnnnnnnncttattacttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| ||| |
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| T |
35721891 |
ttgacccctaagttaggatataataaatcaatcatttaaatccatttacgagcataacttttaaaataaatttaccccaaactttttttcttattctttc |
35721792 |
T |
|
| Q |
212 |
ataacaaataaaataattacaacacga |
238 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
35721791 |
ataacaaataaaataattacaatacga |
35721765 |
T |
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