View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_58 (Length: 244)
Name: NF9379_low_58
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35354695 - 35354923
Alignment:
| Q |
1 |
ccctgattccaaattcgatatgaacaataccatcatcttcagtaacttcatctctttctgaagcctttctcttattacccaatataccatttgaagccat |
100 |
Q |
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| T |
35354695 |
ccctgattccaaattcgatatgaacaataccatc---ttcagtaacttcatctctttctgaagcctttctcttattacccaatataccatttgaagccat |
35354791 |
T |
|
| Q |
101 |
aatgctcttattaacctacacgtgtacacacaaacacaagaagagacggtaataagatccttttcacaaatcgaaagcaaaaacaa-----nnnnnnnca |
195 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35354792 |
aatgctcttatcaacctacatgtgtacacacaaacacaagaagagacggtaataagatccttttcacaaatcgaaagcaaaaacaatttttttcttttca |
35354891 |
T |
|
| Q |
196 |
ctgcaaagaaagcagcataaaataactcttat |
227 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35354892 |
ctgcaaagaaagcagcataaaataactcttat |
35354923 |
T |
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