View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9379_low_6 (Length: 573)

Name: NF9379_low_6
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9379_low_6
NF9379_low_6
[»] chr1 (1 HSPs)
chr1 (17-560)||(36375615-36376158)
[»] chr3 (4 HSPs)
chr3 (19-551)||(32249308-32249840)
chr3 (302-543)||(32190113-32190354)
chr3 (88-473)||(32192582-32192965)
chr3 (347-560)||(32184795-32185005)
[»] chr7 (3 HSPs)
chr7 (28-560)||(8843857-8844389)
chr7 (28-566)||(8823473-8824013)
chr7 (30-466)||(8807971-8808406)
[»] chr5 (1 HSPs)
chr5 (441-479)||(35959222-35959260)


Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 17 - 560
Target Start/End: Complemental strand, 36376158 - 36375615
Alignment:
Q  17 agaagtcttgttcaccagttagttgcagaatctctttaccatttttccaccgaaaatgattctcaaataactctatcaaaaacctcactggtgcaaggtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376158 agaagtcttgttcaccagttagttgcagaatctctttaccatttttccaccgaaaatgattctcaaataactctatcaaaaacctcactggtgcaaggtt 36376059  T
Q  117 gtgacagaagatgagaaccttttcctttctcatcacacgtgagattatgctcaaaacaaatcttactttggaaccttttctcaaagcaaatttgttttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376058 gtgacagaagatgagaaccttttcctttctcatcacacgtgagattaggctcaaaacaaatcttactttggaaccttttctcaaagcaaatttgttttgt 36375959  T
Q  217 tctagtctttctagctcttcttcggagaaaaacttagctgcacatgattctgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagct 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36375958 tctagtctttctaactcttcttcggagaaaaacttagctgcacatgattctgctgttttgatcaaccatggatgtattgacccgagtgttatcaaaagct 36375859  T
Q  317 caacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagat 416  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36375858 caacctcaagagagtaaccggtactgcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagat 36375759  T
Q  417 ttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttcc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36375758 ttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttcc 36375659  T
Q  517 gcatcaatattagagttaattttcttttcaatgttctccaagaa 560  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  36375658 gcatcaatatttgagttaattttcttttcaatgttctccaagaa 36375615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 551
Target Start/End: Original strand, 32249308 - 32249840
Alignment:
Q  19 aagtcttgttcaccagttagttgcagaatctctttaccatttttccaccgaaaatgattctcaaataactctatcaaaaacctcactggtgcaaggttgt 118  Q
    |||||| | ||||| ||||||  || ||||||||||||||||| |||| ||||||  ||||||||||||||||| || || ||||| |||||||||||||    
T  32249308 aagtctagctcaccggttagtaccataatctctttaccattttgccactgaaaatatttctcaaataactctattaagaatctcacaggtgcaaggttgt 32249407  T
Q  119 gacagaagatgagaaccttttcctttctcatcacacgtgagattatgctcaaaacaaatcttactttggaaccttttctcaaagcaaatttgttttgttc 218  Q
    |||| ||||| ||||||||||| ||| |||  || |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| ||  |||    
T  32249408 gacaaaagataagaaccttttcatttttcactactcgtgagattaggctcaaaacaaatcttactttggaactttttctcaaatcaaatttgcttatttc 32249507  T
Q  219 tagtctttctagctcttcttcggagaaaaacttagctgcacatgattctgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctca 318  Q
    |||| | |  |  ||||| || |  |||||||||| |||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  32249508 tagtttcttcaattcttcctccgcaaaaaacttagttgcacatgatgcagctgttttgatcaaccatggatgtattgatccgagtgttatcaaaagctca 32249607  T
Q  319 acctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagattt 418  Q
    |||||||||| ||||| |||||   |  |||||||||| || |||||||| |||||||| || ||||| ||||| | ||||| |||||||||||| ||||    
T  32249608 acctcaagagggtaactggtactctcggccattttcttctgaagtttctgtacaatctcatgctgttcgtcggacgtattcatgagcaatgtatatattt 32249707  T
Q  419 gcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttccgc 518  Q
    | ||||| |||||||| ||||||||| |||||| ||| || ||||| |||||||     ||||||||||| ||||||| || ||||| ||| || ||| |    
T  32249708 gtaaaccaggaagagtctcagaagaatttccactgtcgtacacatcaataaaactggaagtgatttttcgcagcacatatagaccctgcatcttctcctc 32249807  T
Q  519 atcaatattagagttaattttcttttcaatgtt 551  Q
    ||||||||  |||||||||||||||||||||||    
T  32249808 atcaatatccgagttaattttcttttcaatgtt 32249840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 302 - 543
Target Start/End: Original strand, 32190113 - 32190354
Alignment:
Q  302 gtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcac 401  Q
    |||||||||||||| ||||||||||||  ||||| || ||     |||||||||||||||||||  | | ||  |||||||||||||| |||| |||||     
T  32190113 gtgttatcaaaagcacaacctcaagaggataaccagtgcacttagccattttcttttgcagtttacgtaaaacttcgtgttgttcatcagatgtattcat 32190212  T
Q  402 gagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctata 501  Q
    ||||| ||| |||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||| |||| | | ||||||||||| ||||||| ||||    
T  32190213 gagcagtgtttagatttgtaaacctggaagagtatcagaagaatttccactgtcataaacatcgatgaaacgactagtgatttttcgcagcacatatata 32190312  T
Q  502 cccttcattttttccgcatcaatattagagttaattttcttt 543  Q
    ||||||||||||||| |||||||||  ||||||| |||||||    
T  32190313 cccttcattttttcctcatcaatatctgagttaaatttcttt 32190354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 88 - 473
Target Start/End: Complemental strand, 32192965 - 32192582
Alignment:
Q  88 tctatcaaaaacctcactggtgcaaggttgtgacagaagatgagaaccttttcctttctcatcacacgtgagattatgctcaaaacaaatcttactttgg 187  Q
    ||||||||||||||||| |||||||||||| |||| ||| | |||| |||||| ||| || | ||||||||||||| ||||||| |||| |||| ||| |    
T  32192965 tctatcaaaaacctcacaggtgcaaggttgagacaaaagctaagaatcttttcatttttcgttacacgtgagattaggctcaaa-caaaacttattttag 32192867  T
Q  188 aaccttttctcaaagcaaatttgttttgttctagtctttctagctcttcttcggagaaaaacttagctgcacatgattctgctgttttgatcaaccatgg 287  Q
    ||||||| |||||   ||||||  ||  ||||||||| |  |  | ||||| |||||||||||| ||||||||||   ||||||||||||||||| ||||    
T  32192866 aacctttcctcaagtaaaattttcttccttctagtctcttcaatttttctttggagaaaaacttcgctgcacatgtggctgctgttttgatcaactatgg 32192767  T
Q  288 atgtattaacccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttca 387  Q
    ||||||  ||||||||||||||||||  |||||||||||||  ||||  |||||     |||||||||| |||| ||| || | |||| |||||||||||    
T  32192766 atgtatcgacccgagtgttatcaaaatttcaacctcaagagtataacttgtacacttagccattttcttctgcattttatgtaaaatcacgtgttgttca 32192667  T
Q  388 tcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaacc 473  Q
     | |||| ||||| ||||| | | |||||||| ||| | |||||||||||| ||||| |||||| |||||||| ||| || |||||    
T  32192666 gcagatgtattcatgagcagtatttagatttgtaaa-ctggaagagtatcataagaatttccactgtcataaagatcaatgaaacc 32192582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 560
Target Start/End: Complemental strand, 32185005 - 32184795
Alignment:
Q  347 ccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaact 446  Q
    |||||||||| ||||||||||| | |||||  ||||||||||||||  |||| | ||||| | |||||||||  || ||   ||||||||||||| || |    
T  32185005 ccattttcttctgcagtttctgaa-aatcttatgttgttcatcggacacatttatgagcactttatagatttctaatcctaaaagagtatcagaataatt 32184907  T
Q  447 tccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttccgcatcaatattagagttaattttcttttca 546  Q
    ||||   |||||||||||||| |||||| |  ||||||| |  ||||||| || ||||| ||||||| || ||| | |||| | ||||||||||||| ||    
T  32184906 tccattttcataaacatcgatgaaaccactcatgatttt-cacagcacatatacaccctgcatttttccctcatga-tatttgcgttaattttctttgca 32184809  T
Q  547 atgttctccaagaa 560  Q
    ||||| ||||||||    
T  32184808 atgttgtccaagaa 32184795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 8e-81; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 28 - 560
Target Start/End: Original strand, 8843857 - 8844389
Alignment:
Q  28 tcaccagttagttgcagaatctctttaccatttttccaccgaaaatgattctcaaataactctatcaaaaacctcactggtgcaaggttgtgacagaaga 127  Q
    |||||||| |||  ||||| |||||| ||||||| |||  |||| |  |||||||| |||||||| ||||| ||||| |||||||||| |||||| ||||    
T  8843857 tcaccagtaagtatcagaacctcttttccattttgccattgaaagtatttctcaaacaactctatgaaaaatctcacaggtgcaaggtagtgacaaaaga 8843956  T
Q  128 tgagaaccttttcctttctcatcacacgtgagattatgctcaaaacaaatcttactttggaaccttttctcaaagcaaatttgttttgttctagtctttc 227  Q
    | ||||||||||| ||| |||  ||||||||||||| ||||| ||||||||||| ||||||||||||||| ||| |||||||| ||   ||||| || |     
T  8843957 taagaaccttttcatttttcactacacgtgagattaggctcagaacaaatcttattttggaaccttttcttaaatcaaatttgattctgtctagcctctt 8844056  T
Q  228 tagctcttcttcggagaaaaacttagctgcacatgattctgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaaga 327  Q
     |  || ||||| |  ||||||||  ||||||||| |  |||||||||||||||||||||||||||  | || ||||||||||||||||| |||||||||    
T  8844057 caattcatcttcagcaaaaaacttctctgcacatgctgttgctgttttgatcaaccatggatgtatcgatccaagtgttatcaaaagctctacctcaaga 8844156  T
Q  328 gagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgg 427  Q
    | |||||| |||||  |  |||||||||| ||||||||||| | ||||||  | ||||||||| ||| ||||| ||||| |||||| ||||| ||||| |    
T  8844157 gggtaaccagtacactcagccattttcttctgcagtttctgtaaaatctcaagctgttcatcgtatgtattcatgagcagtgtatatatttgtaaaccag 8844256  T
Q  428 gaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttccgcatcaatatt 527  Q
    |||| |||||||| ||| ||||||  |||||||| ||||| ||||   ||||||| ||||| ||||||| || ||||| |||||||||  ||||  |||     
T  8844257 gaagtgtatcagaggaatttccactttcataaacgtcgatgaaactgcttgtgatctttcgcagcacatgtagaccctgcattttttcttcatcgttatc 8844356  T
Q  528 agagttaattttcttttcaatgttctccaagaa 560  Q
     |||||||||||| |  ||||||| ||||||||    
T  8844357 tgagttaattttcctagcaatgttgtccaagaa 8844389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 28 - 566
Target Start/End: Complemental strand, 8824013 - 8823473
Alignment:
Q  28 tcaccagttagttgcagaatctctttaccatttttcc-accgaaaatgattctcaaataactctatcaaaaacctcactggtgcaaggttgtgacagaag 126  Q
    |||| ||||||| ||| || |||||| |||||||||| |  |||| |  ||||||||||||||||| ||||| ||||| ||||||| || |||||| |||    
T  8824013 tcactagttagtagcaaaacctcttttccatttttcccattgaaagtacttctcaaataactctataaaaaatctcacaggtgcaacgtagtgacaaaag 8823914  T
Q  127 atgagaaccttttcctttctcatcacacgtgagattatgctcaaaacaaatcttactttggaaccttttctcaaagcaaatttgttttgttctagtcttt 226  Q
    || ||||||||||| ||| |||  ||| ||||||||| ||||| || |||||||| |||||||||||| || ||| |||||| | ||  |||||| ||||    
T  8823913 ataagaaccttttcatttttcactacatgtgagattaggctcataaaaaatcttattttggaacctttacttaaatcaaattcgattccttctagccttt 8823814  T
Q  227 ctagctcttcttcggagaaaaacttagc-tgcacatgattctgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaa 325  Q
      |  ||||||| ||| ||||| |||   |||||||| |  |||| ||||||||||||||||||||||  | |  ||||||||||||| ||| |||||||    
T  8823813 tcaattcttctttggaaaaaaaattaatatgcacatgttgttgctattttgatcaaccatggatgtatggatctaagtgttatcaaaatctctacctcaa 8823714  T
Q  326 gagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaacc 425  Q
    ||||||||| ||||||  |  ||||||||||||||||||| |  | || ||| |||||||||||  | | ||||  || || |||||| ||||| |||||    
T  8823713 gagagtaactggtacactcagccattttcttttgcagtttatatataacctcatgttgttcatcatacgtattcctgaccagtgtataaatttgtaaacc 8823614  T
Q  426 gggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttccgcatcaata 525  Q
     ||| | |||||||||||| ||||||  |||||||| ||||| ||||   | ||||| ||| | ||||||  || ||||| |||||||||| ||||| |     
T  8823613 aggaggtgtatcagaagaatttccactttcataaacgtcgatgaaactgctcgtgatcttttgcagcacaggtagaccctgcattttttcctcatcattg 8823514  T
Q  526 ttagagttaattttcttttcaatgttctccaagaataatct 566  Q
    |  |||||||||||| |  ||||||| |||| ||| |||||    
T  8823513 tgtgagttaattttcctagcaatgttttccatgaagaatct 8823473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 8807971 - 8808406
Alignment:
Q  30 accagttagttgcagaatctctttaccatttttccaccgaaaatgattctcaaataactctatcaaaaacctcactggtgcaaggttgtgacagaagatg 129  Q
    |||||||||| | |||| |||||| |||||||| ||  |||| |  ||||||||||||||||| |||||  ||   |||||||||| || | | |||||     
T  8807971 accagttagtagaagaacctcttttccattttttcattgaaagtacttctcaaataactctattaaaaatttctaaggtgcaaggtagttataaaagata 8808070  T
Q  130 agaaccttttcctttctcatcacacgtgagattatgctcaaaacaaatcttactttggaaccttttctcaaagcaaatttgttttgttctagtctttcta 229  Q
    ||||||| ||| ||| |||  ||| ||||||||| ||||| | ||||| | | |||||||  ||||||||||  ||||||| || ||||||| || |  |    
T  8808071 agaacctcttcatttttcactacaggtgagattaggctcagaccaaatttaattttggaaatttttctcaaattaaatttgattcgttctagcctcttca 8808170  T
Q  230 gctcttcttcggagaaaaacttagctgcacatgattctgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaagaga 329  Q
      ||||||| ||  |||||||||  |||||||| |  |||||||||||||| ||||||||||||  | || ||||||||||||| ||| | || |||||     
T  8808171 attcttctttggcaaaaaacttatatgcacatgttgttgctgttttgatcagccatggatgtatggatccaagtgttatcaaaatctcga-ctgaagagg 8808269  T
Q  330 gtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccggga 429  Q
    |||| |  ||||  | | ||||||||||||||||||||| | |||||| || | || ||| ||   ||||   ||||||||||||||| | ||||| |||    
T  8808270 gtaatcaatacactcaatcattttcttttgcagtttctgtaaaatctcatgctattaatcagacatattcctaagcaatgtatagattcgtaaaccagga 8808369  T
Q  430 agagtatcagaagaacttccaccgtcataaacatcga 466  Q
     | |||||||||||| ||||||  |||||||| ||||    
T  8808370 ggtgtatcagaagaatttccactttcataaacgtcga 8808406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 35959222 - 35959260
Alignment:
Q  441 agaacttccaccgtcataaacatcgataaaaccatttgt 479  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  35959222 agaacttccagcttcataaacatcgataaaaccatttgt 35959260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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