View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_61 (Length: 228)
Name: NF9379_low_61
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 8974862 - 8975062
Alignment:
| Q |
14 |
catcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattct |
113 |
Q |
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| T |
8974862 |
catcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattct |
8974961 |
T |
|
| Q |
114 |
tcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccatg |
213 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974962 |
tcttcaaggaccacccaagaatttcatagaacaattaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccatg |
8975061 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
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| |
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|
| T |
8975062 |
t |
8975062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 8945618 - 8945447
Alignment:
| Q |
14 |
catcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattct |
113 |
Q |
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|||||||| ||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| ||||||| |
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| T |
8945618 |
catcactacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattct |
8945519 |
T |
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| Q |
114 |
tcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgct |
185 |
Q |
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| T |
8945518 |
tcttcaagggccatccaagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgct |
8945447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 8963494 - 8963666
Alignment:
| Q |
42 |
aatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattcttcttcaaggaccacccgagaatttcata |
141 |
Q |
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|||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||| |||| |||||||||| ||||||| ||| ||||||||| | |
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| T |
8963494 |
aatgattgttctaatccttccttgcatctcaactacccttcttttattgcttttttcaacgctggaaattcttctccaaggacagcccaagaatttcaca |
8963593 |
T |
|
| Q |
142 |
gaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccatgt |
214 |
Q |
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| T |
8963594 |
ggacagttaccaatgttggtgaaggacaaacggtttatgttgctagcattactccaattgaaggcttcaatgt |
8963666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 8958452 - 8958652
Alignment:
| Q |
14 |
catcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattct |
113 |
Q |
| |
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||||||| ||| |||||||||||| | |||||||| ||| ||||||| |||||||| || ||||||||||||||||| |||||| || || |||||| |
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| T |
8958452 |
catcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttcttttattgcattcttcgataatgggaattct |
8958551 |
T |
|
| Q |
114 |
tcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccatg |
213 |
Q |
| |
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||||||||||| |||| |||||||||||||||| |||||||||||||| | ||| || | |||||||| || |||||||| | ||||||||||||| |
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| T |
8958552 |
tcttcaaggacaacccaagaatttcatagaacaattaccaatgttggtgagggagaaacagtttatgtttctagcattactcaggttgaagggttccatg |
8958651 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
8958652 |
t |
8958652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 9948061 - 9947986
Alignment:
| Q |
42 |
aatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattcttctt |
117 |
Q |
| |
|
|||||||| ||||||||||| |||||| | || |||||| |||||||||||||||||||| || ||||||||||| |
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| T |
9948061 |
aatgattgctctaaaccttcattggatattaaccaccctttttttattgctttcttcaatggtggaaattcttctt |
9947986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 34962401 - 34962230
Alignment:
| Q |
14 |
catcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattct |
113 |
Q |
| |
|
|||||||| ||| |||||||| ||| | |||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||| || ||||||| |
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| T |
34962401 |
catcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttattgcttttttcaatgatggaaattct |
34962302 |
T |
|
| Q |
114 |
tcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgct |
185 |
Q |
| |
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||||||||| | | | |||||||| |||||||||||||||||||||| | ||| || | |||||||||||| |
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| T |
34962301 |
tcttcaaggccgatacaagaatttcgtagaacagttaccaatgttggtgacggacaagcaatttatgttgct |
34962230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 21686772 - 21686637
Alignment:
| Q |
23 |
cattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattcttcttcaagg |
122 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||| || ||||| || |||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
21686772 |
cattacaagatcttctttcaatgattgctctaaaccttccttagatcttaactacccttcttttattgctttctccaatgctcgtaa---ttcttcaagg |
21686676 |
T |
|
| Q |
123 |
accacccgagaatttcatagaacagttaccaatgttggt |
161 |
Q |
| |
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|| || |||||||| ||||||||||| ||||||||| |
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| T |
21686675 |
acaacaaatgaatttcacagaacagttacaaatgttggt |
21686637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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