View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_68 (Length: 220)
Name: NF9379_low_68
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 18078906 - 18078722
Alignment:
| Q |
23 |
agctggtgccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttga |
122 |
Q |
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| T |
18078906 |
agctggtgccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttga |
18078807 |
T |
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| Q |
123 |
tttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtaggtgaaccctaactgtctctgct |
207 |
Q |
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| T |
18078806 |
tttttactgtatatgtgactatgacgctgttctcgtcctccgccattgaaatttcaaatgtaggtgaaccgtaattgtctatgct |
18078722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 18076913 - 18076816
Alignment:
| Q |
101 |
gggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtaggtgaaccctaact |
198 |
Q |
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| T |
18076913 |
gggaccgtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccatagaaatttgaaatgcaggttaaccctaact |
18076816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 51478443 - 51478309
Alignment:
| Q |
64 |
tcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctcc |
163 |
Q |
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| T |
51478443 |
tcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatatacgtgactatgtcattgttctcttcctca |
51478344 |
T |
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| Q |
164 |
gccattgaaatttcaaatgtaggtgaaccctaact |
198 |
Q |
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| T |
51478343 |
gccattgaaatttcaaatgcaggtgagccctaact |
51478309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 51454259 - 51454143
Alignment:
| Q |
66 |
gatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgc |
165 |
Q |
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| T |
51454259 |
gatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgtgtggttgttctcttcctccgc |
51454160 |
T |
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| Q |
166 |
cattgaaatttcaaatg |
182 |
Q |
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| T |
51454159 |
cattgaaatttcgaatg |
51454143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 42431626 - 42431704
Alignment:
| Q |
108 |
tgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtagg |
186 |
Q |
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| T |
42431626 |
tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattgaaatttctaatgtagg |
42431704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 42433456 - 42433368
Alignment:
| Q |
94 |
taggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatg |
182 |
Q |
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| T |
42433456 |
taggtctgggacaatgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattgaaatttcaaatg |
42433368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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