View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9379_low_73 (Length: 205)
Name: NF9379_low_73
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9379_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 1542786 - 1542620
Alignment:
| Q |
20 |
tgttcgtatatgtgtctgcgcttcatatatcaataaaaccctatgcagcaccaacatgaagatgacaaaacacagtgacaagtcaatcccggtaaacatg |
119 |
Q |
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| T |
1542786 |
tgttcgtatatgtgtctgtgcttcatatatcaataaaaccctatgcagcaccaacatgaacatgacaaaacacagtgacaagtcaatcccggtaaacatg |
1542687 |
T |
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| Q |
120 |
taaacatgtcaatgttatagagataaaacccacatagacaaaagaataaatcatgcatttatatatt |
186 |
Q |
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| T |
1542686 |
taaacatgtcaatgttatagagataaaacccacatagacaaaagaataaatcatgcatttatatatt |
1542620 |
T |
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